MS4A3

General Information

Gene Name       : MS4A3
Gene ID             : ENSG00000149516.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MS4A3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MS4A3ENSG00000149516.130.000.000.00ENCSR000AEF
HepG2MS4A3ENSG00000149516.130.000.000.00ENCSR985KAT
K562MS4A3ENSG00000149516.1333.4445.3739.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MS4A3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MS4A3 RNA is bound by 9 proteins.  







eCLIP assay for MS4A3 is not avaliable on ENCORE database.





9 proteins are bound to MS4A3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr115983808059838131+3'-UTR3.765664.82552K562UPF1
chr115983788359837979+3'-UTR3.646087.61178K562IGF2BP1
chr115983456259834576+3'-UTR,CDS4.4224617.18209K562YBX3
chr115983704659837053+3'-UTR,CDS,intron-Proximal3.565958.43159K562YBX3
chr115983708659837109+3'-UTR,CDS3.7914312.47992K562YBX3
chr115983847659838505+3'-UTR3.100705.17928K562YBX3
chr115983710959837124+3'-UTR,CDS4.1296613.19940K562YBX3
chr115983451759834562+3'-UTR,CDS3.5375414.36418K562YBX3
chr115983838959838427+3'-UTR4.155353.95344K562PUM2
chr115983799559838067+3'-UTR3.868947.83818K562IGF2BP1
chr115983706759837086+3'-UTR,CDS3.193737.22113K562YBX3
chr115983450059834584+3'-UTR,CDS3.616575.42056K562SND1
chr115983452559834574+3'-UTR,CDS3.260983.34065K562IGF2BP1
chr115983457659834585+3'-UTR,CDS5.201649.99165K562YBX3
chr115983848159838526+3'-UTR4.340244.65489K562IGF2BP1
chr115983775859837858+3'-UTR4.492094.77733K562IGF2BP2
chr115983712459837138+3'-UTR,CDS4.3641310.31015K562YBX3
chr115982861859828722+5'-UTR,CDS,intron-Distal,intron-Proximal5.565805.39850K562DDX3X
chr115983333459833411+intron-Distal3.222783.09339K562MATR3
chr115982424759824340+intron-Distal,intron-Proximal3.649695.32296K562PRPF8
chr115983322959833308+intron-Distal3.422063.09339K562MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MS4A3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MS4A3 is not available on ENCORE database.

  • 137 RBPs can affect the levels of MS4A3.  








The Knockdown/knockout RNA-Seq assay for MS4A3 is not available on ENCORE database.





137 RBPs can affect the gene expression of MS4A3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MS4A3ENSG00000149516.9257.58650452.79390-0.813806.863604.95140K562AARS
MS4A3ENSG00000149516.91684.36200760.793101.1465022.0138019.02160K562ABCF1
MS4A3ENSG00000149516.91070.48650209.687902.351909.518406.48480K562ADAR
MS4A3ENSG00000149516.91247.87400829.951700.588304.571003.87340K562AGGF1
MS4A3ENSG00000149516.9577.44810911.84590-0.659104.076002.83290K562AKAP8
MS4A3ENSG00000149516.9423.160601095.77790-1.3727027.0237023.31850K562APOBEC3C
MS4A3ENSG00000149516.9616.73670844.29620-0.453105.458502.57540K562ASCC1
MS4A3ENSG00000149516.91344.98480906.021500.569902.940502.00080K562ATP5C1
MS4A3ENSG00000149516.9315.46300789.25540-1.3230023.2080018.80090K562AUH
MS4A3ENSG00000149516.91437.96730901.026800.6743012.764709.93350K562BCCIP
MS4A3ENSG00000149516.91742.30650870.590601.0008032.1875029.08880K562BCLAF1
MS4A3ENSG00000149516.9814.11820497.754600.709706.326904.99710K562BOP1
MS4A3ENSG00000149516.91300.18040529.983401.2946021.7019018.15980K562BUD13
MS4A3ENSG00000149516.9531.34450991.95410-0.900605.431203.74290K562CCDC124
MS4A3ENSG00000149516.91519.32320724.976301.0673024.2698020.64900K562CEBPZ
MS4A3ENSG00000149516.92178.50220793.550501.4568028.2611023.85200K562CKAP4
MS4A3ENSG00000149516.92068.26260883.483201.2270033.3942030.03090K562CPEB4
MS4A3ENSG00000149516.92086.36050529.197701.9790075.7592071.96630K562CPSF6
MS4A3ENSG00000149516.9551.26560219.502401.328404.752602.28900K562CPSF7
MS4A3ENSG00000149516.91193.71030660.472400.8538015.6296012.85150K562CSTF2
MS4A3ENSG00000149516.93598.533701526.795801.2368044.0812041.06830K562CELF1
MS4A3ENSG00000149516.9735.51980338.465201.119706.897703.92260K562DAZAP1
MS4A3ENSG00000149516.92329.15180973.757701.2581015.4251012.32680K562DDX19B
MS4A3ENSG00000149516.91147.94840833.288400.462105.582203.82150K562DDX21
MS4A3ENSG00000149516.9513.99200763.55180-0.571005.438403.57890K562DDX27
MS4A3ENSG00000149516.91590.70040736.602001.1106019.0601015.39190K562DDX28
MS4A3ENSG00000149516.9182.24690914.36430-2.3269080.3705077.41500K562DDX47
MS4A3ENSG00000149516.92406.59360929.483901.3724053.9244050.00390K562DKC1
MS4A3ENSG00000149516.9687.18590234.062801.5537011.683808.40070K562DNAJC2
MS4A3ENSG00000149516.9117.36160713.78920-2.6045043.4735039.70780K562EEF2
MS4A3ENSG00000149516.91929.71940659.126901.5497034.2122032.22890K562EIF2S2
MS4A3ENSG00000149516.915.53830208.87780-3.748805.549804.08920K562EIF3A
MS4A3ENSG00000149516.962.14490738.43920-3.5708078.5324074.63120K562EIF3D
MS4A3ENSG00000149516.9126.99520528.37800-2.056804.143503.17880K562EIF3G
MS4A3ENSG00000149516.92490.491104162.41780-0.741004.458901.95560K562EIF3H
MS4A3ENSG00000149516.9592.58590914.60990-0.626104.803703.72160K562EIF4A3
MS4A3ENSG00000149516.91323.15640823.617600.6838011.857309.34830K562EIF4B
MS4A3ENSG00000149516.9353.802401241.82160-1.8114048.7765045.53700K562EIF4G2
MS4A3ENSG00000149516.91247.11780581.648001.1003013.192909.57510K562ESF1
MS4A3ENSG00000149516.91477.70880798.336000.8882019.1214015.60940K562EWSR1
MS4A3ENSG00000149516.91234.67470578.141001.0945022.2171019.00530K562EXOSC5
MS4A3ENSG00000149516.91025.81910538.558900.929504.633903.52400K562FMR1
MS4A3ENSG00000149516.9517.38760951.14900-0.8784016.0962014.74430K562FXR1
MS4A3ENSG00000149516.91083.63700582.688600.8950013.2228010.17970K562G3BP1
MS4A3ENSG00000149516.92024.889001043.346600.9565011.205209.58880K562G3BP2
MS4A3ENSG00000149516.92894.17470691.437302.0654063.1736059.27240K562GEMIN5
MS4A3ENSG00000149516.9587.93620456.110300.366202.628901.51570K562GLRX3
MS4A3ENSG00000149516.9853.54590505.206900.756507.834306.49330K562GPKOW
MS4A3ENSG00000149516.92468.10350878.275801.4906040.2454037.26260K562GRSF1
MS4A3ENSG00000149516.9754.17370430.563500.808609.280305.92110K562GRWD1
MS4A3ENSG00000149516.91426.21390467.993701.6075012.814409.26230K562HNRNPA0
MS4A3ENSG00000149516.91935.81010648.803301.5770018.8207016.39260K562HNRNPA1
MS4A3ENSG00000149516.9879.04770524.162600.745803.149301.82310K562HNRNPA2B1
MS4A3ENSG00000149516.91878.53060487.967101.9446022.4656019.01530K562HNRNPAB
MS4A3ENSG00000149516.9406.30380608.26510-0.582103.827201.60370K562HNRNPH1
MS4A3ENSG00000149516.92350.98780826.288601.5084010.494808.32510K562HNRNPL
MS4A3ENSG00000149516.91136.12790718.376000.661204.434803.29500K562HNRNPU
MS4A3ENSG00000149516.91309.17790563.539301.216005.349002.35670K562HNRNPUL1
MS4A3ENSG00000149516.92165.80410741.507501.5463040.9861038.43940K562HSPD1
MS4A3ENSG00000149516.91959.50290833.671501.2328011.976108.71370K562IGF2BP1
MS4A3ENSG00000149516.91225.22270609.019201.0084012.162609.55620K562IGF2BP2
MS4A3ENSG00000149516.91329.40420619.656201.1011018.6552015.53930K562IGF2BP3
MS4A3ENSG00000149516.91385.79050476.698201.539504.273402.48940K562ILF2
MS4A3ENSG00000149516.9621.30000916.58540-0.561002.493001.71410K562KIF1C
MS4A3ENSG00000149516.92289.67450431.505902.4076057.1828053.10020K562KRR1
MS4A3ENSG00000149516.9704.13850502.479500.486702.919001.42150K562LIN28B
MS4A3ENSG00000149516.9330.39860639.32900-0.952404.847303.58880K562MATR3
MS4A3ENSG00000149516.91282.12940493.158001.3783030.7758027.90580K562METAP2
MS4A3ENSG00000149516.9687.610801323.67720-0.9449014.0999011.75350K562MSI2
MS4A3ENSG00000149516.9901.04740479.537700.9099017.8001016.00420K562MTPAP
MS4A3ENSG00000149516.91125.87680679.515500.728407.675405.35060K562NONO
MS4A3ENSG00000149516.91275.62850532.824801.259409.525308.25280K562NSUN2
MS4A3ENSG00000149516.91237.86270723.544200.774608.336105.31300K562PA2G4
MS4A3ENSG00000149516.9893.73340458.317400.963403.727202.52960K562PABPN1
MS4A3ENSG00000149516.91076.95630625.903800.782803.924302.30230K562PCBP1
MS4A3ENSG00000149516.9156.91520735.39070-2.2285041.7311038.93750K562PCBP3
MS4A3ENSG00000149516.91559.74250653.435401.2551021.8918018.00290K562PES1
MS4A3ENSG00000149516.91429.06150710.804301.0074011.744208.56360K562PKM
MS4A3ENSG00000149516.95079.108701276.003101.99280102.7411099.02340K562PNPT1
MS4A3ENSG00000149516.9121.11460564.04550-2.2194043.4653040.76530K562POLR2G
MS4A3ENSG00000149516.91123.47870620.980200.855306.672405.29990K562PPIG
MS4A3ENSG00000149516.9961.09520464.126601.050103.446201.42490K562PPIL4
MS4A3ENSG00000149516.91032.32950544.715000.922204.093502.18610K562PPP1R8
MS4A3ENSG00000149516.9189.96820671.12640-1.8208029.4447026.99690K562PRPF8
MS4A3ENSG00000149516.91068.11750444.050801.2662023.3619020.30240K562PSIP1
MS4A3ENSG00000149516.9103.60390622.30000-2.5865016.9371015.35600K562PTBP1
MS4A3ENSG00000149516.9508.653601354.93640-1.4135028.8137026.18920K562PUF60
MS4A3ENSG00000149516.93541.064801441.079101.2969040.5468037.16770K562PUM1
MS4A3ENSG00000149516.93455.593601412.082701.2910057.1329053.70510K562PUM2
MS4A3ENSG00000149516.91454.93410856.677200.764009.141508.20280K562PUS1
MS4A3ENSG00000149516.91404.92190833.029700.754004.315402.29870K562RBM17
MS4A3ENSG00000149516.9296.08570581.73670-0.974404.878002.87050K562RBM34
MS4A3ENSG00000149516.9621.35970405.268300.616505.265203.89040K562RCC2
MS4A3ENSG00000149516.92009.909001060.999900.9216014.5034010.92690K562RECQL
MS4A3ENSG00000149516.932.74720683.62740-4.3838091.5396087.64320K562RPS19
MS4A3ENSG00000149516.9280.040402098.92110-2.90590100.2891096.19740K562RPS3
MS4A3ENSG00000149516.91424.65720468.990101.602905.416802.90430K562SAFB2
MS4A3ENSG00000149516.9311.38660502.65430-0.690905.667804.11740K562SAFB
MS4A3ENSG00000149516.9222.13800519.65230-1.2261014.4934011.53300K562SDAD1
MS4A3ENSG00000149516.9296.83830574.30140-0.952106.609904.33770K562SERBP1
MS4A3ENSG00000149516.9920.85210419.041301.135805.195703.38510K562SF1
MS4A3ENSG00000149516.91519.42450525.739301.5310053.1029050.26410K562SF3A3
MS4A3ENSG00000149516.9917.43290480.639600.932508.584706.79720K562SF3B1
MS4A3ENSG00000149516.9435.902001086.10440-1.317107.507906.05420K562SF3B4
MS4A3ENSG00000149516.9988.61110510.709600.952804.616602.75640K562SFPQ
MS4A3ENSG00000149516.9595.45130226.101001.396909.038306.86480K562SLBP
MS4A3ENSG00000149516.9567.65190320.096700.826404.577101.98220K562SMNDC1
MS4A3ENSG00000149516.91148.70240481.401401.254607.524005.13460K562SNRNP200
MS4A3ENSG00000149516.9965.62370670.153000.526904.371002.26420K562SRP68
MS4A3ENSG00000149516.9783.27340610.005700.360601.950701.34460K562SRSF1
MS4A3ENSG00000149516.91711.63920743.661901.2026038.5033034.70240K562SRSF7
MS4A3ENSG00000149516.9337.61390641.99150-0.9272012.808009.67750K562SRSF9
MS4A3ENSG00000149516.91522.65480545.073601.482004.667402.93930K562SSB
MS4A3ENSG00000149516.91096.25640717.588500.611306.234104.13480K562SSRP1
MS4A3ENSG00000149516.92303.48630656.285001.8113047.7744043.67950K562STAU1
MS4A3ENSG00000149516.91258.46660590.303801.092004.522801.95600K562SUGP2
MS4A3ENSG00000149516.91241.54130575.722801.108605.875703.56090K562SUPT6H
MS4A3ENSG00000149516.9455.75900649.81260-0.511803.199202.10460K562SUPV3L1
MS4A3ENSG00000149516.9399.17900617.48590-0.629402.797602.08690K562TARDBP
MS4A3ENSG00000149516.91282.53030592.335301.1144016.8430013.43170K562TFIP11
MS4A3ENSG00000149516.9784.55080453.869100.789508.577506.70330K562TRIM56
MS4A3ENSG00000149516.91067.99010639.592500.739608.544206.03500K562TRIP6
MS4A3ENSG00000149516.9277.68180534.64420-0.945107.894305.02210K562TRNAU1AP
MS4A3ENSG00000149516.91387.795601045.454200.408602.563101.78930K562U2AF2
MS4A3ENSG00000149516.94066.114301527.569401.4123012.159609.52870K562UBE2L3
MS4A3ENSG00000149516.9320.96760687.73800-1.0994013.2497010.95290K562UCHL5
MS4A3ENSG00000149516.91971.84020564.964201.8032026.4258024.49520K562UPF1
MS4A3ENSG00000149516.91877.30640688.657601.4467030.3809026.30370K562UPF2
MS4A3ENSG00000149516.91352.13830868.322300.638803.044601.66170K562UTP18
MS4A3ENSG00000149516.91904.48480380.669302.3227063.2036059.10630K562UTP3
MS4A3ENSG00000149516.91603.94510483.424001.7302048.1717045.03010K562WDR3
MS4A3ENSG00000149516.9304.49010502.69130-0.723308.640807.22840K562WDR43
MS4A3ENSG00000149516.91022.63570789.615900.373002.977801.63530K562WRN
MS4A3ENSG00000149516.91476.62210700.296001.0762015.9574012.87590K562XRN2
MS4A3ENSG00000149516.9994.72980566.417900.812303.497801.63830K562YTHDC2
MS4A3ENSG00000149516.91625.07860750.684801.1141023.1075020.50200K562ZC3H8
MS4A3ENSG00000149516.9358.35810601.51920-0.747208.223505.24190K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MS4A3 is not available on ENCORE database.





16 RBPs can affect the splicing of MS4A3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMS4A3ENSG00000149516.9chr11+5983704659837148598344235983458559837676598377060.141000.000250.00670includedK562SRSF1
SEMS4A3ENSG00000149516.9chr11+5982861859828789598241005982421359829940598301420.080000.002080.03758includedK562SRSF1
SEMS4A3ENSG00000149516.9chr11+598370465983714859834423598345855983767659837706-0.129000.001940.03586excludedK562SF3B4
SEMS4A3ENSG00000149516.9chr11+598317345983179159824059598242135983442359834585-0.075000.001850.03450excludedK562SF3B4
SEMS4A3ENSG00000149516.9chr11+5982861859828789598241005982421359831734598317910.258000.000390.06096includedK562MATR3
SEMS4A3ENSG00000149516.9chr11+5983173459831791598240595982421359834423598345850.067000.000400.08985includedK562PCBP1
SEMS4A3ENSG00000149516.9chr11+598370465983714859834423598345855983767659837706-0.166000.000910.09640excludedK562LARP4
SEMS4A3ENSG00000149516.9chr11+598299405983007859824155598242135983173459831791-0.123000.000830.04475excludedK562EFTUD2
SEMS4A3ENSG00000149516.9chr11+598317345983179159824059598242135983442359834585-0.051000.003680.06439excludedK562U2AF1
SEMS4A3ENSG00000149516.9chr11+5982994059830078598286185982878959831734598317910.106000.000020.00278includedK562HNRNPL
SEMS4A3ENSG00000149516.9chr11+598286185982878959824100598242135982994059830142-0.133000.000280.02475excludedK562HNRNPL
SEMS4A3ENSG00000149516.9chr11+598370465983714859834423598345855983767659837706-0.105000.002740.04504excludedK562U2AF2
SEMS4A3ENSG00000149516.9chr11+598317345983179159824059598242135983442359834585-0.179000.000000.00000excludedK562U2AF2
SEMS4A3ENSG00000149516.9chr11+598317345983179159824059598242135983442359834585-0.150000.002010.06381excludedK562TARDBP
SEMS4A3ENSG00000149516.9chr11+5983704659837148598344235983458559837676598385870.179000.000000.00072includedK562CPSF6
A3SSMS4A3ENSG00000149516.9chr11+5983703059837148598370465983714859834423598345850.080000.001250.05417longerK562U2AF1
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344235983458559828618598287895983704659837148-0.168000.000010.001852includedK562HNRNPL
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344295983458559828618598287895983704659837148-0.166000.000010.002172includedK562HNRNPL
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344295983458559828618598287895983767659838587-0.259000.000300.032872includedK562HNRNPL
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344235983458559824059598242135983704659837148-0.154000.001510.093802includedK562HNRNPL
MXEMS4A3ENSG00000149516.9chr11+5983442359834585598370465983714859831734598317915983767659838601-0.181000.002730.064832includedK562UCHL5
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344235983458559829940598300785983704659837148-0.213000.000720.025232includedK562RBM15
MXEMS4A3ENSG00000149516.9chr11+5983442359834585598370465983714859831734598317915983767659838601-0.106000.008450.090912includedK562U2AF1
MXEMS4A3ENSG00000149516.9chr11+5983173459831791598344235983458559829940598300785983704659837148-0.192000.000190.005522includedK562PUS1
MXEMS4A3ENSG00000149516.9chr11+59829940598300785983173459831791598286185982878959834423598345850.199000.000370.008771includedK562SRSF1
MXEMS4A3ENSG00000149516.9chr11+59829940598300785983173459831791598286185982878959834423598345850.119000.005170.056431includedK562U2AF2
MXEMS4A3ENSG00000149516.9chr11+59828618598287895982994059830078598241555982421359831734598317910.261000.001330.040311includedK562DHX30
MXEMS4A3ENSG00000149516.9chr11+59828618598287895983442359834585598241005982421359837046598371480.154000.003160.060121includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MS4A3 is not avaliable on ENCORE database.