LBR

General Information

Gene Name : LBR
Gene ID : ENSG00000143815.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LBR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LBR	ENSG00000143815.14	84.28	76.76	80.52	ENCSR000AEF
HepG2	LBR	ENSG00000143815.14	45.50	79.97	62.73	ENCSR985KAT
K562	LBR	ENSG00000143815.14	115.42	132.23	123.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LBR is not avaliable on ENCORE database.

Proteins bound to RNA

LBR RNA is bound by 32 proteins.

CanvasJS.com

eCLIP assay for LBR is not avaliable on ENCORE database.

32 proteins are bound to LBR RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	225590353	225590379	-	3'-UTR,intron-Distal	4.98597	400.00000	K562	PUM2
chr1	225590325	225590342	-	3'-UTR,intron-Distal	4.60223	78.02731	K562	PUM2
chr1	225590379	225590432	-	3'-UTR,intron-Distal	3.72911	56.56455	K562	PUM2
chr1	225590342	225590353	-	3'-UTR,intron-Distal	4.59172	56.48207	K562	PUM2
chr1	225615654	225615695	-	5'-UTR,intron-Distal,intron-Proximal	4.73134	51.78018	K562	DDX3X
chr1	225590295	225590325	-	3'-UTR,intron-Distal	4.03246	51.20597	K562	PUM2
chr1	225615693	225615737	-	5'-UTR,intron-Distal,intron-Proximal	4.67493	47.56238	HepG2	DDX3X
chr1	225615695	225615768	-	5'-UTR,intron-Distal,intron-Proximal	4.24600	47.46851	K562	DDX3X
chr1	225590168	225590220	-	3'-UTR,intron-Distal	3.41777	40.99896	K562	PUM2
chr1	225600144	225600183	-	CDS,intron-Distal,intron-Proximal	4.04921	22.58909	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 135 entries

eCLIP assay for LBR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LBR is not available on ENCORE database.
158 RBPs can affect the levels of LBR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LBR is not available on ENCORE database.

158 RBPs can affect the gene expression of LBR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LBR	ENSG00000143815.10	1282.41390	3491.14290	-1.44480	108.61490	105.52560	HepG2	HNRNPL
LBR	ENSG00000143815.10	4140.64270	8960.65260	-1.11370	66.69370	63.95380	K562	DDX47
LBR	ENSG00000143815.10	796.85810	2506.59140	-1.65330	64.03060	62.22790	HepG2	TIAL1
LBR	ENSG00000143815.10	760.93780	1932.41180	-1.34460	54.47120	52.03320	HepG2	PRPF4
LBR	ENSG00000143815.10	4296.99040	7112.47700	-0.72700	53.34530	50.78240	K562	NSUN2
LBR	ENSG00000143815.10	1546.39250	3800.25520	-1.29720	53.40460	50.53420	HepG2	NOL12
LBR	ENSG00000143815.10	417.09250	1805.43570	-2.11390	53.61090	50.49680	HepG2	TFIP11
LBR	ENSG00000143815.10	1198.87830	2634.75850	-1.13600	50.86670	48.32850	HepG2	ILF2
LBR	ENSG00000143815.10	765.84720	2334.41360	-1.60790	49.18060	47.16330	HepG2	HNRNPA1
LBR	ENSG00000143815.10	1234.28530	2528.73490	-1.03470	42.44440	40.57290	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 219 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LBR is not available on ENCORE database.

24 RBPs can affect the splicing of LBR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594571	-0.23800	0.00000	excluded	K562	SRSF1
SE	LBR	ENSG00000143815.10	chr1	-	225597992	225598118	225594263	225594534	225599038	225599142	-0.21100	0.00000	excluded	K562	SF3B4
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594534	-0.09300	0.00001	excluded	HepG2	U2AF1
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594534	-0.08300	0.00015	excluded	K562	AKAP8L
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594534	-0.10000	0.00000	excluded	HepG2	U2AF2
SE	LBR	ENSG00000143815.10	chr1	-	225602979	225603034	225600155	225600347	225605685	225605882	-0.15100	0.00000	excluded	K562	AQR
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594571	-0.13200	0.00000	excluded	K562	AQR
SE	LBR	ENSG00000143815.10	chr1	-	225602979	225603034	225600155	225600347	225605685	225605882	-0.05800	0.00001	excluded	K562	PUS1
SE	LBR	ENSG00000143815.10	chr1	-	225597992	225598118	225594463	225594534	225599038	225599119	-0.13100	0.00002	excluded	K562	PUS1
SE	LBR	ENSG00000143815.10	chr1	-	225592327	225592408	225592105	225592228	225594365	225594534	-0.09300	0.00001	excluded	K562	PUS1

Showing 1 to 10 of 63 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LBR

General Information

Functions

Localization

Domains (AlphaFold: LBR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LBR is not avaliable on ENCORE database.

32 proteins are bound to LBR RNA:

eCLIP assay for LBR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LBR is not available on ENCORE database.

158 RBPs can affect the gene expression of LBR :

The Knockdown/knockout RNA-Seq assay for LBR is not available on ENCORE database.

24 RBPs can affect the splicing of LBR :

The Knockdown/knockout RNA-Seq assay for LBR is not avaliable on ENCORE database.