GRAMD1A

General Information

Gene Name : GRAMD1A
Gene ID : ENSG00000089351.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GRAMD1A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GRAMD1A	ENSG00000089351.14	13.83	22.25	18.04	ENCSR000AEF
HepG2	GRAMD1A	ENSG00000089351.14	33.99	22.32	28.16	ENCSR985KAT
K562	GRAMD1A	ENSG00000089351.14	39.10	25.89	32.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GRAMD1A is not avaliable on ENCORE database.

Proteins bound to RNA

GRAMD1A RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for GRAMD1A is not avaliable on ENCORE database.

45 proteins are bound to GRAMD1A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	35500326	35500363	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.52932	400.00000	HepG2	EFTUD2
chr19	35500391	35500429	+	intron-Distal,intron-Proximal	6.88647	400.00000	HepG2	EFTUD2
chr19	35500262	35500321	+	intron-Proximal	6.74133	400.00000	HepG2	EFTUD2
chr19	35500376	35500391	+	intron-Distal,intron-Proximal	7.83187	105.53213	HepG2	EFTUD2
chr19	35500364	35500439	+	intron-Distal,intron-Proximal	7.28017	85.71971	K562	EFTUD2
chr19	35500363	35500376	+	intron-Distal,intron-Proximal	7.44581	78.33545	HepG2	EFTUD2
chr19	35500328	35500364	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.98334	60.57905	K562	EFTUD2
chr19	35491640	35491731	+	intron-Distal	5.68682	39.61183	HepG2	CSTF2T
chr19	35502667	35502731	+	intron-Distal	4.82045	38.36812	HepG2	EFTUD2
chr19	35502466	35502540	+	intron-Proximal	4.89525	38.35183	HepG2	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 262 entries

eCLIP assay for GRAMD1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GRAMD1A is not available on ENCORE database.
136 RBPs can affect the levels of GRAMD1A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GRAMD1A is not available on ENCORE database.

136 RBPs can affect the gene expression of GRAMD1A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GRAMD1A	ENSG00000089351.10	203.02220	2421.79350	-3.57640	286.99870	284.34270	HepG2	SSB
GRAMD1A	ENSG00000089351.10	449.13300	2171.90970	-2.27370	129.14510	126.56640	HepG2	DKC1
GRAMD1A	ENSG00000089351.10	301.25710	2005.33000	-2.73480	74.20850	72.52700	HepG2	SRSF1
GRAMD1A	ENSG00000089351.10	388.47760	1639.69980	-2.07750	58.18680	55.97390	HepG2	ZC3H8
GRAMD1A	ENSG00000089351.10	916.81360	2099.49960	-1.19530	52.22030	49.80980	HepG2	DDX19B
GRAMD1A	ENSG00000089351.10	1085.73180	2469.61640	-1.18560	41.55880	40.01550	HepG2	RBM22
GRAMD1A	ENSG00000089351.10	1175.10660	2269.45430	-0.94960	40.44320	38.59810	HepG2	CKAP4
GRAMD1A	ENSG00000089351.10	2178.55810	966.15450	1.17290	40.49790	37.91010	HepG2	PPIL4
GRAMD1A	ENSG00000089351.10	1486.89410	2789.33520	-0.90760	37.49490	36.20350	HepG2	SRFBP1
GRAMD1A	ENSG00000089351.10	1222.51730	2312.31990	-0.91950	35.21600	33.48660	HepG2	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 150 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GRAMD1A is not available on ENCORE database.

26 RBPs can affect the splicing of GRAMD1A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35500326	35500347			35500022	35500233	35500791	35500876	-0.13300	0.00009	excluded	K562	SF3B4
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35504159	35504272			35502377	35502458	35504444	35504602	-0.44600	0.00000	excluded	HepG2	U2AF1
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35496588	35496835			35491275	35491390	35500022	35500233	-0.16500	0.00000	excluded	HepG2	DDX59
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35504159	35504272			35502377	35502458	35504444	35504595	-0.38700	0.00000	excluded	HepG2	U2AF2
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35500326	35500347			35500022	35500233	35500791	35500876	-0.12700	0.00010	excluded	K562	U2AF1
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35500326	35500347			35500022	35500233	35500791	35500876	-0.20700	0.00000	excluded	K562	U2AF2
SE	GRAMD1A	ENSG00000089351.10	chr19	+	35514330	35514451			35514139	35514247	35516952	35517375	-0.07100	0.00000	excluded	K562	SF3B1
RI	GRAMD1A	ENSG00000089351.10	chr19	+	35501015	35501243			35501015	35501099	35501187	35501243	0.05100	0.00001	included	HepG2	RBM22
MXE	GRAMD1A	ENSG00000089351.10	chr19	+	35506727	35506871	35510094	35510213	35505092	35505291	35510294	35510437	-0.26800	0.00004	2included	HepG2	XPO5
MXE	GRAMD1A	ENSG00000089351.10	chr19	+	35506727	35506871	35510094	35510213	35505092	35505291	35510294	35510437	-0.24200	0.00000	2included	HepG2	NOL12

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GRAMD1A

General Information

Functions

Localization

Domains (AlphaFold: GRAMD1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GRAMD1A is not avaliable on ENCORE database.

45 proteins are bound to GRAMD1A RNA:

eCLIP assay for GRAMD1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GRAMD1A is not available on ENCORE database.

136 RBPs can affect the gene expression of GRAMD1A :

The Knockdown/knockout RNA-Seq assay for GRAMD1A is not available on ENCORE database.

26 RBPs can affect the splicing of GRAMD1A :

The Knockdown/knockout RNA-Seq assay for GRAMD1A is not avaliable on ENCORE database.