CTNND1

General Information

Gene Name : CTNND1
Gene ID : ENSG00000198561.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTNND1)

Not Available

Antibody Validation

View validation images for all CTNND1 antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CTNND1	ENSG00000198561.13	27.18	24.10	25.64	ENCSR000AEF
HepG2	CTNND1	ENSG00000198561.13	97.60	108.73	103.16	ENCSR985KAT
K562	CTNND1	ENSG00000198561.13	34.11	36.93	35.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CTNND1	ENCAB598HFH	A300-976A	1			Released, ENCODE4		BGKcLV35-19, Released, ENCODE4
CTNND1	ENCAB264PIN	A300-978A	1			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
CTNND1	K562	CRISPR	BGKcLV28-49,BGKcLV28-50	BGKcLV28-1,BGKcLV28-2	44.2,45.8	NotSatisfied	ENCODE4
CTNND1	K562	CRISPR	CTNND1-BGKcLV35-19,CTNND1-BGKcLV35-20	NT-BGKcLV35-1,NT-BGKcLV35-2	65.4,55.1	Submitting	ENCORE2
CTNND1	HepG2	CRISPR	BGHcLV29-49,BGHcLV29-50	BGHcLV29-1,BGHcLV29-2	no clear band,	NotSatisfied	ENCODE4
CTNND1	HepG2	CRISPR	BGHcLV34-17,BGHcLV34-18	BGHcLV34-1,BGHcLV34-2	no clear band,	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CTNND1	Product_ID: A300-976A Lot_ID: 1 Source: Bethyl Labs Target Name: CTNND1-human
CTNND1	Product_ID: A300-978A Lot_ID: 1 Source: Bethyl Labs Target Name: CTNND1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTNND1 is not avaliable on ENCORE database.

Proteins bound to RNA

CTNND1 RNA is bound by 56 proteins.

CanvasJS.com

eCLIP assay for CTNND1 is not avaliable on ENCORE database.

56 proteins are bound to CTNND1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	57584806	57584849	+	3'-UTR	5.84437	400.00000	K562	PUM2
chr11	57584782	57584806	+	3'-UTR	6.09402	76.34569	K562	PUM2
chr11	57585494	57585530	+	3'-UTR,intron-Proximal	6.01156	73.89452	HepG2	PCBP2
chr11	57585530	57585563	+	3'-UTR	5.21264	61.49349	HepG2	PCBP2
chr11	57585499	57585594	+	3'-UTR,intron-Proximal	4.90335	53.22537	K562	PTBP1
chr11	57585540	57585589	+	3'-UTR	4.60990	49.44324	HepG2	PTBP1
chr11	57546195	57546251	+	intron-Distal	5.61300	46.85611	HepG2	HNRNPM
chr11	57584642	57584713	+	3'-UTR	4.67871	41.51042	K562	PUM2
chr11	57540323	57540406	+	intron-Distal	5.80742	40.90023	K562	PTBP1
chr11	57558905	57558991	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.30662	40.35734	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 291 entries

eCLIP assay for CTNND1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTNND1 is not available on ENCORE database.
133 RBPs can affect the levels of CTNND1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTNND1 is not available on ENCORE database.

133 RBPs can affect the gene expression of CTNND1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTNND1	ENSG00000198561.8	6507.79790	3943.29330	0.72270	50.00830	47.53980	K562	NSUN2
CTNND1	ENSG00000198561.8	4606.70670	8460.07630	-0.87690	46.15120	43.92980	HepG2	HNRNPU
CTNND1	ENSG00000198561.8	3774.33740	8220.51670	-1.12300	44.80800	43.24370	HepG2	TIAL1
CTNND1	ENSG00000198561.8	6779.53630	3986.22320	0.76610	42.96900	40.15850	K562	SRPK2
CTNND1	ENSG00000198561.8	9137.53680	5124.58480	0.83430	31.85120	30.01090	K562	AGGF1
CTNND1	ENSG00000198561.8	4730.88180	8003.25660	-0.75850	31.58650	29.53930	HepG2	PRPF4
CTNND1	ENSG00000198561.8	4849.19210	7673.59850	-0.66220	28.86850	27.10430	HepG2	UPF1
CTNND1	ENSG00000198561.8	6684.77640	10336.02120	-0.62870	26.69620	25.47040	HepG2	SSB
CTNND1	ENSG00000198561.8	6545.12290	4181.14730	0.64640	25.24930	23.34540	K562	UPF1
CTNND1	ENSG00000198561.8	5591.70490	3548.91530	0.65580	25.06870	23.00960	K562	MTPAP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 161 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTNND1 is not available on ENCORE database.

56 RBPs can affect the splicing of CTNND1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CTNND1	ENSG00000198561.8	chr11	+	57556508	57556627	57529268	57529518	57558856	57559145	-0.45200	0.00141	excluded	K562	TAF15
SE	CTNND1	ENSG00000198561.8	chr11	+	57556508	57556627	57529268	57529518	57561481	57561553	0.28900	0.00000	included	HepG2	RBM22
SE	CTNND1	ENSG00000198561.8	chr11	+	57558856	57559145	57529268	57529518	57561481	57561553	0.18100	0.00001	included	HepG2	U2AF1
SE	CTNND1	ENSG00000198561.8	chr11	+	57556508	57556627	57529268	57529518	57558856	57559145	-0.30500	0.00000	excluded	HepG2	U2AF1
SE	CTNND1	ENSG00000198561.8	chr11	+	57561481	57561553	57529268	57529518	57563048	57563201	-0.18700	0.00001	excluded	K562	AKAP8L
SE	CTNND1	ENSG00000198561.8	chr11	+	57558856	57559145	57529289	57529518	57561481	57561553	0.23600	0.00003	included	HepG2	HNRNPK
SE	CTNND1	ENSG00000198561.8	chr11	+	57556508	57556627	57529268	57529518	57558856	57559145	0.32000	0.00023	included	HepG2	QKI
SE	CTNND1	ENSG00000198561.8	chr11	+	57558856	57559145	57529289	57529518	57561481	57561553	0.49800	0.00000	included	HepG2	U2AF2
SE	CTNND1	ENSG00000198561.8	chr11	+	57556508	57556627	57529268	57529518	57558856	57559145	0.23800	0.00025	included	HepG2	AKAP1
SE	CTNND1	ENSG00000198561.8	chr11	+	57583386	57583473	57582865	57582972	57583768	57586650	0.06200	0.00000	included	K562	AQR

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTNND1

General Information

Functions

Localization

Domains (AlphaFold: CTNND1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTNND1 is not avaliable on ENCORE database.

56 proteins are bound to CTNND1 RNA:

eCLIP assay for CTNND1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTNND1 is not available on ENCORE database.

133 RBPs can affect the gene expression of CTNND1 :

The Knockdown/knockout RNA-Seq assay for CTNND1 is not available on ENCORE database.

56 RBPs can affect the splicing of CTNND1 :

The Knockdown/knockout RNA-Seq assay for CTNND1 is not avaliable on ENCORE database.