CCNB1

General Information

Gene Name : CCNB1
Gene ID : ENSG00000134057.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCNB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCNB1	ENSG00000134057.14	109.98	131.63	120.81	ENCSR000AEF
HepG2	CCNB1	ENSG00000134057.14	162.98	231.17	197.07	ENCSR985KAT
K562	CCNB1	ENSG00000134057.14	199.77	198.50	199.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCNB1 is not avaliable on ENCORE database.

Proteins bound to RNA

CCNB1 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for CCNB1 is not avaliable on ENCORE database.

27 proteins are bound to CCNB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	68473516	68473560	+	3'-UTR,polyA_site	6.61899	400.00000	K562	PUM2
chr5	68473440	68473516	+	3'-UTR,CDS	5.18479	85.89198	K562	PUM2
chr5	68462994	68463112	+	5'-UTR,CDS,intron-Proximal	4.37435	69.59955	K562	DDX3X
chr5	68470652	68470737	+	CDS,intron-Proximal	3.80681	21.68992	K562	SF3B4
chr5	68473493	68473526	+	3'-UTR,polyA_site	5.56318	19.20236	K562	PABPC4
chr5	68467116	68467181	+	3'-UTR,CDS	3.35404	18.74287	K562	UCHL5
chr5	68470198	68470327	+	CDS,intron-Distal,intron-Proximal	3.48837	18.29569	K562	PRPF8
chr5	68463117	68463203	+	CDS,intron-Proximal	6.24548	15.90046	K562	AQR
chr5	68473305	68473382	+	3'-UTR,CDS,intron-Proximal	4.15475	15.34537	K562	SF3B4
chr5	68473427	68473459	+	3'-UTR,CDS	4.75223	15.33972	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 67 entries

eCLIP assay for CCNB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCNB1 is not available on ENCORE database.
171 RBPs can affect the levels of CCNB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCNB1 is not available on ENCORE database.

171 RBPs can affect the gene expression of CCNB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCNB1	ENSG00000134057.10	692.40650	3812.13220	-2.46090	145.74250	143.53780	HepG2	SRFBP1
CCNB1	ENSG00000134057.10	118.19150	1508.52720	-3.67390	138.72700	136.04490	HepG2	BOP1
CCNB1	ENSG00000134057.10	809.41190	3375.12420	-2.06000	121.78230	119.41470	HepG2	RBM22
CCNB1	ENSG00000134057.10	1145.31810	4038.08740	-1.81790	113.44050	110.67800	HepG2	ETF1
CCNB1	ENSG00000134057.10	273.70210	2419.90370	-3.14430	113.73460	110.66280	HepG2	SUPV3L1
CCNB1	ENSG00000134057.10	327.71630	2305.54220	-2.81460	110.77310	108.51590	HepG2	TIAL1
CCNB1	ENSG00000134057.10	590.31760	2040.36700	-1.78930	111.13310	108.47510	HepG2	CKAP4
CCNB1	ENSG00000134057.10	153.72760	1138.80150	-2.88910	105.53130	103.49190	HepG2	ZNF622
CCNB1	ENSG00000134057.10	1024.37020	3517.21460	-1.77970	104.49480	101.54480	HepG2	AUH
CCNB1	ENSG00000134057.10	102.99410	1163.38220	-3.49770	97.39040	94.52060	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 220 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCNB1 is not available on ENCORE database.

11 RBPs can affect the splicing of CCNB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CCNB1	ENSG00000134057.10	chr5	+	68473102	68473176	68471223	68471364	68473350	68474072	-0.13100	0.00000	excluded	K562	SF3B4
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.07400	0.00000	excluded	K562	AKAP8L
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.05800	0.00000	excluded	K562	AQR
SE	CCNB1	ENSG00000134057.10	chr5	+	68473065	68473176	68471203	68471364	68473350	68474072	-0.06900	0.00000	excluded	K562	AQR
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.22100	0.00000	excluded	K562	PUS1
SE	CCNB1	ENSG00000134057.10	chr5	+	68473065	68473176	68471223	68471364	68473350	68474072	-0.05400	0.00000	excluded	K562	U2AF1
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.09200	0.00000	excluded	K562	UTP18
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.06200	0.00002	excluded	K562	U2AF2
SE	CCNB1	ENSG00000134057.10	chr5	+	68473065	68473176	68471223	68471364	68473350	68474072	-0.05400	0.00000	excluded	K562	U2AF2
SE	CCNB1	ENSG00000134057.10	chr5	+	68470077	68470236	68467096	68467279	68470703	68470940	-0.12000	0.00000	excluded	K562	RBM15

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCNB1

General Information

Functions

Localization

Domains (AlphaFold: CCNB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCNB1 is not avaliable on ENCORE database.

27 proteins are bound to CCNB1 RNA:

eCLIP assay for CCNB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCNB1 is not available on ENCORE database.

171 RBPs can affect the gene expression of CCNB1 :

The Knockdown/knockout RNA-Seq assay for CCNB1 is not available on ENCORE database.

11 RBPs can affect the splicing of CCNB1 :

The Knockdown/knockout RNA-Seq assay for CCNB1 is not avaliable on ENCORE database.