CAPN2

General Information

Gene Name : CAPN2
Gene ID : ENSG00000162909.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CAPN2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CAPN2	ENSG00000162909.17	11.34	12.06	11.70	ENCSR000AEF
HepG2	CAPN2	ENSG00000162909.17	9.77	10.21	9.99	ENCSR985KAT
K562	CAPN2	ENSG00000162909.17	66.90	68.87	67.89	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CAPN2 is not avaliable on ENCORE database.

Proteins bound to RNA

CAPN2 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for CAPN2 is not avaliable on ENCORE database.

25 proteins are bound to CAPN2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	223963025	223963038	+	3'-UTR	5.56155	59.10050	K562	YBX3
chr1	223963038	223963057	+	3'-UTR	5.80036	58.63754	K562	YBX3
chr1	223963012	223963019	+	3'-UTR	5.55508	55.83003	K562	YBX3
chr1	223962997	223963008	+	3'-UTR	5.44969	44.82719	K562	YBX3
chr1	223957608	223957661	+	CDS,intron-Proximal	5.18799	32.09224	K562	AQR
chr1	223938589	223938674	+	CDS,intron-Proximal	4.79476	20.75402	K562	DDX24
chr1	223940553	223940586	+	CDS	5.18754	20.28136	K562	YBX3
chr1	223957572	223957668	+	CDS,intron-Proximal	4.17192	19.68087	K562	BUD13
chr1	223958139	223958226	+	CDS,intron-Proximal	3.73343	18.51593	K562	BUD13
chr1	223946910	223946963	+	intron-Proximal	5.60761	18.50654	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 90 entries

eCLIP assay for CAPN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CAPN2 is not available on ENCORE database.
163 RBPs can affect the levels of CAPN2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CAPN2 is not available on ENCORE database.

163 RBPs can affect the gene expression of CAPN2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CAPN2	ENSG00000162909.13	5095.80880	733.70620	2.79590	99999.99999	99999.99999	HepG2	ACO1
CAPN2	ENSG00000162909.13	5675.11810	970.37200	2.54790	231.92630	228.39420	HepG2	CELF1
CAPN2	ENSG00000162909.13	4199.87670	1211.18450	1.79380	147.22310	145.00750	HepG2	SRFBP1
CAPN2	ENSG00000162909.13	1447.63210	265.74890	2.44550	130.12600	127.59520	HepG2	SRSF9
CAPN2	ENSG00000162909.13	2861.60200	964.27310	1.56920	115.30050	112.52360	HepG2	SMN1
CAPN2	ENSG00000162909.13	2687.78410	385.67250	2.80090	83.72170	81.48190	HepG2	AKAP1
CAPN2	ENSG00000162909.13	1969.72170	319.10770	2.62580	83.17630	79.92130	HepG2	ASCC1
CAPN2	ENSG00000162909.13	9951.99890	1072.34790	3.21410	80.86320	78.83620	HepG2	RBM22
CAPN2	ENSG00000162909.13	2025.17130	542.00020	1.90160	78.71060	76.84870	HepG2	ZNF622
CAPN2	ENSG00000162909.13	4105.70090	848.36790	2.27480	73.23360	70.30900	HepG2	FIP1L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 191 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CAPN2 is not available on ENCORE database.

15 RBPs can affect the splicing of CAPN2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CAPN2	ENSG00000162909.13	chr1	+	223943181	223943351	223940497	223940658	223945070	223945082	-0.10000	0.00000	0.00001	excluded	K562	HNRNPK
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.28700	0.00000	0.00000	excluded	K562	PUS1
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.14100	0.00000	0.00000	excluded	K562	PTBP1
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.16000	0.00000	0.00000	excluded	K562	FXR1
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.11200	0.00001	0.00065	excluded	K562	SRSF1
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.24700	0.00001	0.00016	excluded	K562	RBM15
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	0.15500	0.00007	0.01429	included	K562	HNRNPK
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.11800	0.00007	0.00783	excluded	K562	EIF3G
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	-0.10800	0.00012	0.00769	excluded	K562	TARDBP
RI	CAPN2	ENSG00000162909.13	chr1	+	223957542	223958227	223957542	223957611	223958148	223958227	0.13000	0.00016	0.00575	included	K562	RBM22

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CAPN2

General Information

Functions

Localization

Domains (AlphaFold: CAPN2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CAPN2 is not avaliable on ENCORE database.

25 proteins are bound to CAPN2 RNA:

eCLIP assay for CAPN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CAPN2 is not available on ENCORE database.

163 RBPs can affect the gene expression of CAPN2 :

The Knockdown/knockout RNA-Seq assay for CAPN2 is not available on ENCORE database.

15 RBPs can affect the splicing of CAPN2 :

The Knockdown/knockout RNA-Seq assay for CAPN2 is not avaliable on ENCORE database.