ZSCAN9

General Information

Gene Name       : ZSCAN9
Gene ID             : ENSG00000137185.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZSCAN9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZSCAN9ENSG00000137185.1216.0015.5515.78ENCSR000AEF
HepG2ZSCAN9ENSG00000137185.129.1613.9211.54ENCSR985KAT
K562ZSCAN9ENSG00000137185.1223.0121.8422.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZSCAN9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZSCAN9 RNA is bound by 6 proteins.  







eCLIP assay for ZSCAN9 is not avaliable on ENCORE database.





6 proteins are bound to ZSCAN9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62819665128196719+3'-UTR,intron-Distal5.9166715.16547K562LIN28B
chr62819524028195278+CDS3.928103.01428K562UCHL5
chr62819502228195116+CDS4.897897.23707K562RBM15
chr62819317028193289+intron-Distal,intron-Proximal3.218413.68010HepG2GTF2F1
chr62819704928197102+intron-Distal3.862383.76275K562PTBP1
chr62819710228197180+intron-Distal3.665248.86713K562PTBP1
chr62819323828193318+intron-Distal,intron-Proximal3.520864.40053K562GTF2F1
chr62819316328193300+intron-Distal,intron-Proximal3.351005.40117HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZSCAN9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZSCAN9 is not available on ENCORE database.

  • 42 RBPs can affect the levels of ZSCAN9.  








The Knockdown/knockout RNA-Seq assay for ZSCAN9 is not available on ENCORE database.





42 RBPs can affect the gene expression of ZSCAN9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZSCAN9ENSG00000137185.7452.02040340.308600.409401.739401.30720HepG2AKAP1
ZSCAN9ENSG00000137185.7302.57090209.197300.532302.689102.09850HepG2BOP1
ZSCAN9ENSG00000137185.7680.34190428.729300.666103.633402.75160HepG2CNOT7
ZSCAN9ENSG00000137185.7377.35990249.877000.594602.472501.73680HepG2DDX55
ZSCAN9ENSG00000137185.7375.09720285.365400.394402.280201.65540HepG2DKC1
ZSCAN9ENSG00000137185.7570.55320289.656500.977906.642705.60940HepG2EIF4B
ZSCAN9ENSG00000137185.7263.40600383.36360-0.541403.041902.18890HepG2EIF4G2
ZSCAN9ENSG00000137185.7682.40670498.651300.452504.306103.58480HepG2ETF1
ZSCAN9ENSG00000137185.7440.45380291.502000.595404.369303.32350HepG2EWSR1
ZSCAN9ENSG00000137185.7423.62170279.588300.599402.944202.15040HepG2FIP1L1
ZSCAN9ENSG00000137185.7140.15480217.73410-0.635501.955201.41120HepG2GPKOW
ZSCAN9ENSG00000137185.7399.35870281.914500.502302.387901.73670HepG2HNRNPK
ZSCAN9ENSG00000137185.7270.90480192.922800.489702.373301.49160HepG2HNRNPM
ZSCAN9ENSG00000137185.7176.18430244.26850-0.471402.142801.60150HepG2HNRNPU
ZSCAN9ENSG00000137185.7233.87250318.86890-0.447202.190201.54170HepG2IGF2BP1
ZSCAN9ENSG00000137185.7454.64340265.601300.775402.338301.44160HepG2IGF2BP3
ZSCAN9ENSG00000137185.7347.39120226.310500.618203.775502.83430HepG2MSI2
ZSCAN9ENSG00000137185.7502.58040309.059200.701404.853104.02750HepG2NCBP2
ZSCAN9ENSG00000137185.7282.54990192.681000.552202.114101.40350HepG2PRPF8
ZSCAN9ENSG00000137185.7411.57900286.860700.520702.353201.84150HepG2PTBP1
ZSCAN9ENSG00000137185.7976.43930416.777001.2282027.1776025.88590HepG2RBM22
ZSCAN9ENSG00000137185.7285.19060430.67270-0.594703.056402.21650HepG2RPS3A
ZSCAN9ENSG00000137185.7330.44650190.593700.793804.004903.08020HepG2RRP9
ZSCAN9ENSG00000137185.7480.50030281.393100.771905.209804.26600HepG2SF3A3
ZSCAN9ENSG00000137185.7408.74690298.686000.452502.827002.23010HepG2SF3B4
ZSCAN9ENSG00000137185.7991.42730470.728601.0745024.9974023.88440HepG2SRFBP1
ZSCAN9ENSG00000137185.7401.89830280.184700.520403.555502.93410HepG2TAF15
ZSCAN9ENSG00000137185.7362.33940257.484000.492802.883602.03150HepG2TIA1
ZSCAN9ENSG00000137185.7390.11290239.186700.705704.571103.77410HepG2U2AF1
ZSCAN9ENSG00000137185.7338.65400240.932900.491103.000502.38160HepG2UTP3
ZSCAN9ENSG00000137185.7335.94650228.113800.558403.945303.16760HepG2ZC3H8
ZSCAN9ENSG00000137185.71256.41960975.210300.365402.716902.13310K562AQR
ZSCAN9ENSG00000137185.7568.87830416.145800.450902.675601.81810K562BOP1
ZSCAN9ENSG00000137185.7168.31580257.46690-0.613203.204102.05110K562CCAR1
ZSCAN9ENSG00000137185.7979.346201176.10400-0.264102.154201.32000K562EIF4G2
ZSCAN9ENSG00000137185.7459.53790588.87440-0.357802.647402.05360K562FXR1
ZSCAN9ENSG00000137185.7683.25680867.52130-0.344502.460801.74600K562GRSF1
ZSCAN9ENSG00000137185.7517.87710718.29890-0.472003.906502.62370K562HNRNPL
ZSCAN9ENSG00000137185.7481.43140691.06290-0.521505.144903.91300K562HNRNPU
ZSCAN9ENSG00000137185.7428.06140678.08410-0.663606.878405.52440K562MAGOH
ZSCAN9ENSG00000137185.7437.73000676.73950-0.628606.424104.93280K562MATR3
ZSCAN9ENSG00000137185.7894.808701283.21470-0.520104.857103.77940K562PUF60
ZSCAN9ENSG00000137185.71388.842101086.829400.353702.709102.17010K562PUS1
ZSCAN9ENSG00000137185.7458.99540645.80700-0.492603.897903.06440K562SRSF1
ZSCAN9ENSG00000137185.7758.73610565.816000.423203.632002.70970K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZSCAN9 is not available on ENCORE database.





2 RBPs can affect the splicing of ZSCAN9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZSCAN9ENSG00000137185.7chr6+2819579028195900281954672819561528200339282003640.118000.000150.00700includedK562AKAP8L
SEZSCAN9ENSG00000137185.7chr6+2819579028195900281954672819561528200339282003640.166000.004550.08921includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZSCAN9 is not avaliable on ENCORE database.