ZC3HC1

General Information

Gene Name       : ZC3HC1
Gene ID             : ENSG00000091732.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZC3HC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZC3HC1ENSG00000091732.1613.9519.1416.55ENCSR000AEF
HepG2ZC3HC1ENSG00000091732.1618.1920.1219.16ENCSR985KAT
K562ZC3HC1ENSG00000091732.1657.1259.3758.24ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZC3HC1Ribo-STAMP-293TshRNAZC3HC1-BGRSLV04-65,ZC3HC1-BGRSLV04-66NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZC3HC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZC3HC1 RNA is bound by 10 proteins.  







eCLIP assay for ZC3HC1 is not avaliable on ENCORE database.





10 proteins are bound to ZC3HC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7129679300129679348-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.509895.18660HepG2PPIG
chr7129691098129691210-5'-UTR,CDS,intron-Distal,intron-Proximal3.9265510.24124K562DDX3X
chr7129691060129691098-CDS,intron-Distal3.497424.08283K562DDX3X
chr7129690911129691025-intron-Distal4.267203.85435K562PRPF8
chr7129683831129683937-intron-Distal4.542033.45317HepG2HNRNPL
chr7129672117129672181-intron-Distal3.323833.14580K562ILF3
chr7129672574129672639-intron-Distal4.932153.23894HepG2PCBP2
chr7129672457129672529-intron-Distal5.517056.90462K562PTBP1
chr7129690937129691011-intron-Distal4.263577.88692K562GTF2F1
chr7129672446129672524-intron-Distal5.397688.19722HepG2PCBP2
chr7129665162129665246-intron-Distal3.360833.14580K562ILF3
chr7129672459129672541-intron-Distal4.384323.28841HepG2PTBP1
chr7129690923129691015-intron-Distal4.447215.44815HepG2PRPF4
chr7129687414129687508-intron-Distal3.728643.08314K562TARDBP
chr7129673092129673159-intron-Distal3.248053.85034K562ILF3
chr7129672433129672520-intron-Distal5.122288.76651K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZC3HC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZC3HC1 is not available on ENCORE database.

  • 35 RBPs can affect the levels of ZC3HC1.  








The Knockdown/knockout RNA-Seq assay for ZC3HC1 is not available on ENCORE database.





35 RBPs can affect the gene expression of ZC3HC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZC3HC1ENSG00000091732.11538.50750330.979800.702103.671802.78510HepG2CNOT7
ZC3HC1ENSG00000091732.11474.80570585.71450-0.302901.938501.38210HepG2CELF1
ZC3HC1ENSG00000091732.11397.71240547.17120-0.460302.366301.79140HepG2DDX6
ZC3HC1ENSG00000091732.11353.60110526.06480-0.573103.597002.92500HepG2EIF2S1
ZC3HC1ENSG00000091732.11335.86900566.01360-0.752904.551403.68100HepG2EIF4B
ZC3HC1ENSG00000091732.11425.79440595.17990-0.483203.204502.33130HepG2EIF4G2
ZC3HC1ENSG00000091732.11409.64590537.88640-0.392902.021701.39580HepG2PABPC4
ZC3HC1ENSG00000091732.11461.06000632.81420-0.456804.710803.97960HepG2PUM1
ZC3HC1ENSG00000091732.11510.46600632.34600-0.308901.865601.30940HepG2PUM2
ZC3HC1ENSG00000091732.11558.74470419.745600.412603.547702.86870HepG2PUS1
ZC3HC1ENSG00000091732.11544.53930679.62430-0.319702.150301.67880HepG2RBM22
ZC3HC1ENSG00000091732.11377.33020530.32160-0.491003.407002.66540HepG2RBM25
ZC3HC1ENSG00000091732.11171.63710298.29320-0.797403.996303.07330HepG2RRP9
ZC3HC1ENSG00000091732.11497.45460345.867300.524202.834802.15200HepG2SF3A3
ZC3HC1ENSG00000091732.11279.20250526.93000-0.916308.298207.41200HepG2TAF15
ZC3HC1ENSG00000091732.11284.41340373.42870-0.392802.622702.07000HepG2TRIM56
ZC3HC1ENSG00000091732.11457.00900616.46830-0.431802.052001.33700HepG2UBE2L3
ZC3HC1ENSG00000091732.11395.89720296.136900.418802.577801.99650HepG2UTP3
ZC3HC1ENSG00000091732.11526.42520383.027600.458702.533101.83730HepG2XRN2
ZC3HC1ENSG00000091732.111151.18460930.395000.307102.919802.01770K562DKC1
ZC3HC1ENSG00000091732.111196.392501438.27330-0.265602.576301.87800K562EIF2S2
ZC3HC1ENSG00000091732.11912.30080706.276600.369203.270702.40780K562EIF3G
ZC3HC1ENSG00000091732.111088.76450785.233400.471404.332303.30600K562EIF4A3
ZC3HC1ENSG00000091732.111317.53070816.607800.6900012.5731011.37860K562FXR1
ZC3HC1ENSG00000091732.11469.78570641.79920-0.450102.347701.70440K562G3BP2
ZC3HC1ENSG00000091732.111381.835301078.884100.356903.185602.04250K562HNRNPL
ZC3HC1ENSG00000091732.111137.79540809.832900.490402.404101.54020K562HNRNPM
ZC3HC1ENSG00000091732.111069.983301371.06680-0.357702.406301.63130K562PCBP3
ZC3HC1ENSG00000091732.111390.002301117.697800.314502.250901.51230K562PPIG
ZC3HC1ENSG00000091732.111346.782501003.933500.423803.467302.62650K562PRPF8
ZC3HC1ENSG00000091732.111243.14760979.108900.344403.094902.39700K562PTBP1
ZC3HC1ENSG00000091732.111009.47740835.445700.272902.086701.55850K562RBM15
ZC3HC1ENSG00000091732.111191.29190959.880900.311502.425501.75600K562SRSF1
ZC3HC1ENSG00000091732.111391.410601054.826400.399404.312003.28020K562SYNCRIP
ZC3HC1ENSG00000091732.11930.478901186.86370-0.351102.532801.84400K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZC3HC1 is not available on ENCORE database.





6 RBPs can affect the splicing of ZC3HC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZC3HC1ENSG00000091732.11chr7-1296685591296686611296659971296661521296687411296688690.082000.000000.00000includedK562AQR
SEZC3HC1ENSG00000091732.11chr7-129664102129664346129663403129663563129665997129666222-0.068000.000380.00536excludedK562AQR
SEZC3HC1ENSG00000091732.11chr7-129688765129688984129668741129668869129691060129691229-0.099000.000000.00007excludedK562AQR
SEZC3HC1ENSG00000091732.11chr7-129688813129688984129679303129679387129691060129691209-0.153000.000160.01860excludedK562HNRNPUL1
SEZC3HC1ENSG00000091732.11chr7-129688813129688984129679303129679387129691060129691209-0.199000.001170.02195excludedK562HNRNPC
A3SSZC3HC1ENSG00000091732.11chr7-1296793031296794121296793031296793871296888131296889840.775000.000640.00463longerK562AQR
A3SSZC3HC1ENSG00000091732.11chr7-1296660751296662221296660751296661521296687411296689080.099000.000000.00000longerK562AQR
A3SSZC3HC1ENSG00000091732.11chr7-1296621581296624051296621581296623651296633501296635630.120000.000000.00000longerK562AQR
MXEZC3HC1ENSG00000091732.11chr7-129680779129680941129683467129683720129679358129679387129688872129688984-0.111000.010450.090222includedK562DROSHA
MXEZC3HC1ENSG00000091732.11chr7-129679303129679412129688765129688984129668741129668869129691060129691291-0.119000.001600.013732includedK562AQR
MXEZC3HC1ENSG00000091732.11chr7-129679303129679387129688765129688984129668741129668869129691060129691214-0.101000.007730.051342includedK562AQR
MXEZC3HC1ENSG00000091732.11chr7-129679303129679423129688765129688984129668741129668869129691060129691291-0.120000.001460.012672includedK562AQR
MXEZC3HC1ENSG00000091732.11chr7-129663410129663563129664102129664346129662158129662365129665997129666152-0.091000.000020.000272includedK562AQR
MXEZC3HC1ENSG00000091732.11chr7-129663410129663563129664102129664346129662158129662365129665997129666152-0.078000.001070.034502includedK562EFTUD2
MXEZC3HC1ENSG00000091732.11chr7-129663350129663563129664102129664346129662158129662365129665997129666152-0.208000.000980.032762includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZC3HC1 is not avaliable on ENCORE database.