TMX2-CTNND1

General Information

Gene Name       : TMX2-CTNND1
Gene ID             : ENSG00000254462.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMX2-CTNND1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMX2-CTNND1ENSG00000254462.10.000.350.17ENCSR000AEF
HepG2TMX2-CTNND1ENSG00000254462.10.560.000.28ENCSR985KAT
K562TMX2-CTNND1ENSG00000254462.10.110.230.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMX2-CTNND1 RNA is bound by 48 proteins.  







eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.





48 proteins are bound to TMX2-CTNND1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr115755904057559095+3'-UTR,5'-UTR,CDS,intron-Distal3.782406.23800K562SRSF1
chr115755890557558991+3'-UTR,CDS,intron-Distal,intron-Proximal4.3066240.35734HepG2U2AF2
chr115755895957558994+3'-UTR,CDS,intron-Distal,intron-Proximal4.244715.22147HepG2SRSF1
chr115755896257559062+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.028749.11858HepG2GRWD1
chr115755885757558906+3'-UTR,intron-Distal,intron-Proximal4.2268813.51643HepG2PTBP1
chr115755890957558998+3'-UTR,CDS,intron-Distal,intron-Proximal3.285053.61570K562SRSF1
chr115755882657558898+3'-UTR,intron-Distal,intron-Proximal3.414039.27693HepG2U2AF1
chr115755899057559046+3'-UTR,5'-UTR,CDS,intron-Distal3.392076.97987K562ZNF622
chr115755890757558977+3'-UTR,CDS,intron-Distal,intron-Proximal3.354524.35567K562U2AF1
chr115755882057558905+3'-UTR,intron-Distal,intron-Proximal3.8233438.92409HepG2U2AF2
chr115755891057558986+3'-UTR,CDS,intron-Distal,intron-Proximal3.335199.66720K562U2AF2
chr115748008257480174+5'-UTR,CDS4.204924.17587HepG2DDX3X
chr115748007957480233+5'-UTR,CDS3.3126918.01696K562DDX3X
chr115750513857505160+CDS,intron-Proximal3.103314.83230K562AQR
chr115748027057480315+CDS,intron-Proximal3.179575.50267HepG2PRPF8
chr115750507757505163+CDS,intron-Proximal3.729439.86479HepG2PPIG
chr115750607857506168+3'-UTR,CDS,intron-Distal,intron-Proximal4.150466.74156HepG2SF3B4
chr115750904857509089+5'-UTR,CDS,intron-Distal4.356524.66990HepG2DDX3X
chr115750965757509721+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.2853423.14669HepG2LARP4
chr115754372057543763+intron-Distal3.607844.31711K562EXOSC5
chr115754608757546158+intron-Distal4.1869523.57127HepG2HNRNPM
chr115750923257509299+CDS,intron-Distal,intron-Proximal5.815406.41139HepG2EFTUD2
chr115750591657505990+intron-Distal,intron-Proximal4.051103.71735K562TIA1
chr115750779257507860+3'-UTR,intron-Distal3.529313.48322HepG2UPF1
chr115754325657543384+intron-Distal3.299677.58877HepG2SFPQ
chr115754604657546087+intron-Distal3.915677.98764K562HNRNPM
chr115752933757529379+5'-UTR,intron-Distal3.041145.11643K562ZNF622
chr115754019857540407+intron-Distal5.5207124.58054K562MATR3
chr115750655357506619+3'-UTR,CDS,intron-Distal,intron-Proximal3.147136.87870K562EFTUD2
chr115750664957506701+3'-UTR,CDS,intron-Distal3.003315.93547HepG2SND1
chr115753311257533158+intron-Distal4.0631910.47897HepG2ILF3
chr115754544057545469+intron-Distal3.4288011.07501HepG2SUGP2
chr115750908957509131+CDS,intron-Distal3.8097435.19068K562DDX3X
chr115754604357546087+intron-Distal4.1132218.69670HepG2HNRNPM
chr115753142457531477+5'-UTR,intron-Distal4.6063711.58327HepG2HNRNPM
chr115754620457546335+intron-Distal3.688975.78669HepG2EXOSC5
chr115755165757551705+intron-Distal3.645255.47956HepG2ILF3
chr115754566057545699+intron-Distal4.4956515.07450HepG2HNRNPM
chr115750777457507874+3'-UTR,intron-Distal3.785299.28069HepG2DDX55
chr115750968857509709+3'-UTR,5'-UTR,intron-Distal,intron-Proximal6.46423400.00000K562PABPC4
chr115754037957540426+intron-Distal4.5926810.00695HepG2PTBP1
chr115754623457546273+intron-Distal3.0108113.56825HepG2SUGP2
chr115750967357509722+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.102584.96120K562NOLC1
chr115754455157544598+intron-Distal3.153553.13650K562HNRNPA1
chr115754608757546151+intron-Distal4.1932714.34683K562HNRNPM
chr115751033457510340+3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.214285.45096K562LARP4
chr115754636157546411+intron-Distal4.026239.75195K562HNRNPM
chr115754658157546651+intron-Distal3.5487414.02675HepG2SUGP2
chr115753702357537098+intron-Distal3.8140626.33109HepG2PTBP1
chr115751033357510358+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.7579821.40643K562DDX6
chr115752928757529397+5'-UTR,intron-Distal3.220276.14590HepG2DDX3X
chr115750969057509721+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.398629.30693K562LARP4
chr115754685357546912+intron-Distal3.077144.70948K562PTBP1
chr115754557957545607+intron-Distal3.402846.69536HepG2HNRNPM
chr115752930557529430+5'-UTR,intron-Distal3.2796214.13045HepG2NCBP2
chr115750971657509720+3'-UTR,5'-UTR,intron-Distal,intron-Proximal6.90786400.00000K562PABPC4
chr115754556857545600+intron-Distal3.414893.84001K562HNRNPM
chr115753703857537188+intron-Distal3.094836.15155K562MATR3
chr115750590157505948+3'-UTR,CDS,intron-Distal,intron-Proximal4.895794.86944K562AQR
chr115750928357509316+CDS,intron-Distal3.664454.36276HepG2LARP4
chr115750829957508411+3'-UTR,intron-Distal3.499414.44982K562UPF1
chr115754636857546413+intron-Distal4.779186.08869K562EXOSC5
chr115751023857510338+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.0035113.33055K562SF3B4
chr115754032157540378+intron-Distal4.2047637.74280HepG2PTBP1
chr115750835357508396+3'-UTR,intron-Distal3.276373.50044K562YBX3
chr115750895457509106+5'-UTR,CDS,intron-Distal4.7695316.99233K562GEMIN5
chr115750895657509037+5'-UTR,intron-Distal3.0609911.80518K562DDX3X
chr115750786357507923+3'-UTR,intron-Distal3.381364.48159HepG2LARP4
chr115754555457545600+intron-Distal3.6784111.47178HepG2SUGP2
chr115754477057544784+intron-Distal3.460688.08525HepG2HNRNPC
chr115754649657546524+intron-Distal3.868966.29761HepG2MATR3
chr115750967457509721+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal6.8631922.88564HepG2SUB1
chr115750789257507943+3'-UTR,intron-Distal4.097278.05708K562PABPC4
chr115750930657509353+CDS,intron-Distal4.029727.09667K562DHX30
chr115750966357509719+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.6478214.22344K562DDX55
chr115754032357540406+intron-Distal5.8074240.90023K562PTBP1
chr115754549157545529+intron-Distal3.3424316.71005HepG2SUGP2
chr115754615857546183+intron-Distal4.2625413.92953HepG2HNRNPM
chr115752989857529966+intron-Distal3.775969.05686HepG2RBFOX2
chr115754373057543775+intron-Distal4.263383.01994HepG2GTF2F1
chr115754619557546251+intron-Distal5.6130046.85611HepG2HNRNPM
chr115750903757509089+5'-UTR,CDS,intron-Distal3.8288828.72029K562DDX3X
chr115754568257545718+intron-Distal3.3184510.05767HepG2SUGP2
chr115748737257487437+intron-Distal3.259063.37821K562ILF3
chr115750780157507852+3'-UTR,intron-Distal4.3564835.38651K562PABPC4
chr115750966557509720+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.232308.30937K562ZC3H11A
chr115754369957543838+intron-Distal4.183405.12778HepG2PCBP2
chr115750779257507852+3'-UTR,intron-Distal4.6881115.73308HepG2LARP4
chr115754630057546352+intron-Distal3.699748.75714K562HNRNPM
chr115754571857545819+intron-Distal3.4679626.20145HepG2SUGP2
chr115754478457544822+intron-Distal3.505098.30313HepG2HNRNPC
chr115754770557547764+intron-Distal3.374743.84371HepG2HNRNPC
chr115753702457537084+intron-Distal5.1085713.62123K562PTBP1
chr115750607657506132+intron-Distal,intron-Proximal3.276725.37841K562SF3B4
chr115754566257545702+intron-Distal3.220333.72827K562HNRNPM
chr115752931157529508+5'-UTR,intron-Distal3.125966.77627K562FTO
chr115754560057545645+intron-Distal4.1533717.64483HepG2SUGP2
chr115754022157540321+intron-Distal3.4430521.37060HepG2PTBP1
chr115754636257546398+intron-Distal4.5140612.90099HepG2HNRNPM
chr115750927957509338+CDS,intron-Distal,intron-Proximal4.7862511.63111K562GEMIN5
chr115753173157531812+intron-Distal4.303673.43967HepG2TAF15
chr115750967057509717+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.615085.53289HepG2DDX55
chr115754451857544582+intron-Distal4.395624.80665HepG2QKI
chr115751033457510363+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8715510.67855K562DDX55
chr115754378957543855+intron-Distal3.230395.02053K562EXOSC5
chr115750664157506661+3'-UTR,CDS,intron-Distal3.151767.98960K562YBX3
chr115750591757505963+intron-Distal,intron-Proximal4.157474.45914HepG2PRPF8
chr115754644757546456+intron-Distal3.029086.57022HepG2SUGP2
chr115750529057505322+3'-UTR,CDS,intron-Distal,intron-Proximal3.127143.18246K562PRPF8
chr115750649657506551+3'-UTR,CDS,intron-Distal,intron-Proximal3.078264.97939HepG2PRPF8
chr115754609657546133+intron-Distal4.539193.66322HepG2EXOSC5
chr115753709657537195+intron-Distal3.5050814.34401HepG2U2AF2
chr115750908957509138+CDS,intron-Distal3.605273.76880HepG2DDX3X
chr115754546957545491+intron-Distal3.4265515.62118HepG2SUGP2
chr115750031357500362+intron-Distal3.414544.23286HepG2QKI
chr115750967657509720+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.8300322.48781K562APOBEC3C
chr115751033457510373+3'-UTR,5'-UTR,intron-Distal,intron-Proximal6.82384400.00000K562PABPC4
chr115751024257510338+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.007495.09328HepG2SF3B4
chr115755172357551837+intron-Distal3.6871510.41778HepG2ILF3
chr115750780357507857+3'-UTR,intron-Distal3.131385.21749HepG2TIA1
chr115754625557546279+intron-Distal5.3657710.04692HepG2HNRNPM
chr115750913157509181+CDS,intron-Distal3.9426219.68984K562DDX3X
chr115754111957541167+intron-Distal5.9772417.54081HepG2HNRNPC
chr115752949757529569+5'-UTR,intron-Distal,intron-Proximal3.610674.79866HepG2PRPF8
chr115753958557539644+intron-Distal3.864213.64484HepG2HNRNPC
chr115754621657546285+intron-Distal4.5439114.87928K562EXOSC5
chr115751033257510381+3'-UTR,5'-UTR,intron-Distal,intron-Proximal6.1615512.96671HepG2LARP4
chr115750670957506767+3'-UTR,CDS,intron-Distal,intron-Proximal4.7671411.91804HepG2PRPF8
chr115754700057547003+intron-Distal3.362977.27933HepG2HNRNPM
chr115754615157546189+intron-Distal5.7083814.50969K562HNRNPM
chr115754630357546344+intron-Distal3.7823310.50062HepG2HNRNPM
chr115750793557507987+3'-UTR,intron-Distal3.537735.10201HepG2IGF2BP1
chr115750964257509720+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.689873.71253K562LIN28B
chr115750752057507582+3'-UTR,CDS,intron-Distal,intron-Proximal4.335783.05889HepG2SF3B4
chr115754620157546234+intron-Distal3.3748810.97318HepG2SUGP2
chr115753531957535329+intron-Distal4.646517.26174HepG2HNRNPC
chr115750845057508520+intron-Distal3.880574.27913HepG2CSTF2
chr115751033457510365+3'-UTR,5'-UTR,intron-Distal,intron-Proximal6.3873716.40466HepG2SUB1
chr115752989257529963+intron-Distal3.346238.72214K562RBFOX2
chr115751033357510364+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.4799913.19710K562APOBEC3C
chr115754649757546528+intron-Distal4.0214110.69077HepG2HNRNPM
chr115754628557546329+intron-Distal4.288737.31365K562EXOSC5
chr115750832657508413+3'-UTR,intron-Distal4.297894.92727HepG2AKAP1
chr115754027357540323+intron-Distal3.8120614.54023K562PTBP1
chr115750908757509171+CDS,intron-Distal3.448735.99350K562RPS3
chr115754609157546138+intron-Distal3.377427.91478K562EXOSC5
chr115754619557546246+intron-Distal4.2154216.11499K562HNRNPM
chr115753305857533112+intron-Distal3.860484.15830HepG2ILF3
chr115753532957535373+intron-Distal4.261809.15277HepG2HNRNPC
chr115750780757507856+3'-UTR,intron-Distal4.421946.90365K562DDX6
chr115753360457533655+intron-Distal4.328264.66738K562KHDRBS1
chr115754401457544122+intron-Distal3.481713.71597K562MATR3
chr115754535757545411+intron-Distal3.110487.87801HepG2SUGP2
chr115750966657509720+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.8974039.22590K562DDX6
chr115750964957509723+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.572553.22032K562FUS
chr115750515557505193+intron-Proximal3.050724.07440K562PRPF8
chr115750516057505187+intron-Proximal3.319794.83230K562AQR
chr115755879957558857+intron-Distal,intron-Proximal3.689979.49508HepG2PTBP1
chr115748028657480315+intron-Proximal3.453183.20886K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMX2-CTNND1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMX2-CTNND1 is not available on ENCORE database.

  • No RBPs affect the gene expression of TMX2-CTNND1 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.






No RBPs affect the gene expression of TMX2-CTNND1 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not available on ENCORE database.





2 RBPs can affect the splicing of TMX2-CTNND1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXETMX2-CTNND1ENSG00000254462.1chr11+57505384575054985750582557505902575050795750514057506135575062420.126000.000300.016511includedK562LIN28B
MXETMX2-CTNND1ENSG00000254462.1chr11+57505030575051405755650857556627574800765748027957558856575590580.129000.006220.043201includedK562AQR
MXETMX2-CTNND1ENSG00000254462.1chr11+57505012575051405755650857556627574800765748027957558856575590580.157000.001810.015261includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMX2-CTNND1 is not avaliable on ENCORE database.