SYN3

General Information

Gene Name       : SYN3
Gene ID             : ENSG00000185666.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYN3ENSG00000185666.140.000.000.00ENCSR000AEF
HepG2SYN3ENSG00000185666.145.444.364.90ENCSR985KAT
K562SYN3ENSG00000185666.140.120.060.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SYN3 RNA is bound by 18 proteins.  







eCLIP assay for SYN3 is not avaliable on ENCORE database.





18 proteins are bound to SYN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223345427633454350-5'-UTR,intron-Distal3.594933.01533HepG2SRSF1
chr223345426333454352-5'-UTR,intron-Distal4.612905.38274HepG2NCBP2
chr223332737533327442-CDS,intron-Distal4.0715811.83519HepG2PPIG
chr223337662933376667-CDS,intron-Distal,intron-Proximal4.422593.45943HepG2BCLAF1
chr223326505733265110-CDS,intron-Distal,intron-Proximal4.450114.34038HepG2BCLAF1
chr223326090533260984-CDS,intron-Distal4.217418.06490HepG2PPIG
chr223332744233327467-CDS,intron-Distal,intron-Proximal5.7932213.11921HepG2PPIG
chr223332737433327452-CDS,intron-Distal,intron-Proximal5.187845.23259HepG2BCLAF1
chr223340233333402387-CDS,intron-Distal,intron-Proximal3.976816.06308HepG2PPIG
chr223337662533376687-CDS,intron-Distal,intron-Proximal5.3535520.19321HepG2PPIG
chr223315518733155200-intron-Distal4.088065.12035HepG2DROSHA
chr223315553933155651-intron-Distal4.534405.11005HepG2PRPF4
chr223315555733155643-intron-Distal5.007434.05003HepG2PCBP2
chr223342654733426597-intron-Distal4.782405.41368HepG2PTBP1
chr223315569933155754-intron-Distal7.1022829.27266HepG2RBFOX2
chr223315664733156746-intron-Distal5.1857415.29755HepG2DROSHA
chr223342639133426470-intron-Distal4.029843.89405HepG2PTBP1
chr223315659133156630-intron-Distal5.4340731.40181HepG2RBFOX2
chr223321612533216207-intron-Distal3.126424.95192HepG2AGGF1
chr223326077833260884-intron-Distal,intron-Proximal4.021583.88726HepG2TIAL1
chr223309459733094698-intron-Distal3.163293.74286HepG2QKI
chr223315620133156247-intron-Distal6.7600223.15008HepG2RBFOX2
chr223321609733216208-intron-Distal4.016725.55877HepG2HNRNPL
chr223314168533141789-intron-Distal5.822329.51434HepG2PTBP1
chr223315626833156326-intron-Distal4.669888.89371HepG2DROSHA
chr223315974133159892-intron-Distal5.227037.79030HepG2PCBP2
chr223315607733156154-intron-Distal4.443556.85082HepG2FAM120A
chr223315561233155683-intron-Distal8.57132213.36147HepG2RBFOX2
chr223319927933199371-intron-Distal3.012193.00437HepG2HNRNPK
chr223342671733426784-intron-Distal4.705095.07733HepG2PTBP1
chr223316029733160386-intron-Distal3.684865.03283HepG2RBFOX2
chr223321008233210142-intron-Distal,intron-Proximal4.495764.74221HepG2PTBP1
chr223315552033155546-intron-Distal6.6328727.11472HepG2DROSHA
chr223344808633448191-intron-Distal4.000993.90256HepG2PRPF4
chr223315652033156593-intron-Distal5.9353917.83696HepG2DDX6
chr223342663533426717-intron-Distal3.457265.50064HepG2PTBP1
chr223315644733156497-intron-Distal6.8730533.19645HepG2RBFOX2
chr223315970733159807-intron-Distal4.481914.27893HepG2DROSHA
chr223315645433156611-intron-Distal6.0093038.77483HepG2DROSHA
chr223314668333146735-intron-Distal4.005613.82414HepG2HNRNPK
chr223331148233311558-intron-Distal4.136343.30440HepG2QKI
chr223342647033426533-intron-Distal5.057076.08961HepG2PTBP1
chr223292895132929113-intron-Distal4.456979.27589HepG2PCBP2
chr223315553533155653-intron-Distal7.5254524.27043HepG2DDX6
chr223315552233155612-intron-Distal9.46120212.18862HepG2RBFOX2
chr223315555233155643-intron-Distal5.2003918.68981HepG2FAM120A
chr223315649733156591-intron-Distal7.1952783.93564HepG2RBFOX2
chr223315554633155575-intron-Distal7.4606245.30313HepG2DROSHA
chr223315557533155651-intron-Distal8.88797100.96793HepG2DROSHA
chr223315606033156201-intron-Distal8.71387204.90398HepG2RBFOX2
chr223344759733447643-intron-Distal4.148703.34098HepG2HNRNPM
chr223342357733423641-intron-Distal5.7735511.59253HepG2PTBP1
chr223296053632960655-intron-Distal5.449097.15660HepG2HNRNPM
chr223341339333413496-intron-Distal4.370804.85866HepG2QKI
chr223315674633156787-intron-Distal3.913413.62924HepG2DROSHA
chr223315545833155498-intron-Distal5.8253314.91269HepG2DROSHA
chr223315586333155966-intron-Distal7.5192187.94544HepG2RBFOX2
chr223315665033156709-intron-Distal5.5994336.16677HepG2RBFOX2
chr223315636933156454-intron-Distal6.8073425.70857HepG2DROSHA
chr223315626733156312-intron-Distal6.4115723.71465HepG2RBFOX2
chr223315575433155796-intron-Distal6.7564026.21903HepG2RBFOX2
chr223315556533155659-intron-Distal3.329603.94360HepG2GTF2F1
chr223315256433152747-intron-Distal4.326113.81373HepG2DROSHA
chr223343384233433940-intron-Distal4.2003610.66089HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SYN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYN3 is not available on ENCORE database.

  • 35 RBPs can affect the levels of SYN3.  








The Knockdown/knockout RNA-Seq assay for SYN3 is not available on ENCORE database.





35 RBPs can affect the gene expression of SYN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYN3ENSG00000185666.1044.6242094.17910-1.077602.821002.28400HepG2AKAP1
SYN3ENSG00000185666.1051.57110102.83010-0.995602.743501.81040HepG2BCCIP
SYN3ENSG00000185666.1074.18330141.32750-0.929903.583202.91130HepG2BOP1
SYN3ENSG00000185666.1067.15950133.61640-0.992403.883602.99250HepG2CALR
SYN3ENSG00000185666.1047.5529099.42690-1.064102.974602.17840HepG2CNOT7
SYN3ENSG00000185666.1069.69380148.95750-1.095806.320505.26690HepG2DAZAP1
SYN3ENSG00000185666.1091.12930140.74420-0.627102.205801.47280HepG2EIF4G2
SYN3ENSG00000185666.1081.51860185.67420-1.187607.302106.40440HepG2ETF1
SYN3ENSG00000185666.1056.15760106.91870-0.929002.528701.73020HepG2EWSR1
SYN3ENSG00000185666.10140.8577083.070900.761702.607901.93660HepG2FXR1
SYN3ENSG00000185666.1071.78340133.46800-0.894803.091202.36340HepG2HNRNPC
SYN3ENSG00000185666.10139.3135083.564300.737302.227501.65770HepG2MATR3
SYN3ENSG00000185666.1069.53280137.97550-0.988604.228203.23960HepG2MSI2
SYN3ENSG00000185666.1084.29040127.75190-0.599902.082501.40280HepG2PRPF4
SYN3ENSG00000185666.10152.5358072.933401.064405.164404.46530HepG2PTBP1
SYN3ENSG00000185666.10208.68520149.645700.479702.006801.48540HepG2PUM1
SYN3ENSG00000185666.10153.7743054.404201.498903.594501.49850HepG2RBM17
SYN3ENSG00000185666.1094.64560155.19020-0.713402.887702.36130HepG2RBM22
SYN3ENSG00000185666.10130.3057081.174600.682702.089901.60590HepG2NELFE
SYN3ENSG00000185666.10207.4417075.590901.4563010.391509.31210HepG2RECQL
SYN3ENSG00000185666.1074.04460129.70200-0.808702.896502.07960HepG2RPS2
SYN3ENSG00000185666.1077.35330118.07520-0.610201.982401.42240HepG2SAFB2
SYN3ENSG00000185666.10167.8914052.572501.675004.582202.73680HepG2SF1
SYN3ENSG00000185666.1099.23160175.28310-0.820804.047303.47480HepG2SRFBP1
SYN3ENSG00000185666.10146.7259079.267000.888203.518803.00180HepG2SRSF1
SYN3ENSG00000185666.10137.8533064.482801.096005.396004.66920HepG2SRSF9
SYN3ENSG00000185666.10267.81930158.304700.758504.895104.10890HepG2SUCLG1
SYN3ENSG00000185666.1044.95590100.64650-1.162703.242402.51750HepG2SUPV3L1
SYN3ENSG00000185666.10116.3374071.231700.707602.211801.70070HepG2TAF15
SYN3ENSG00000185666.10105.3538065.469800.686202.057101.33380HepG2TIA1
SYN3ENSG00000185666.1065.56160128.84230-0.974703.910303.33730HepG2TIAL1
SYN3ENSG00000185666.1075.76640145.87120-0.945103.786703.05570HepG2U2AF1
SYN3ENSG00000185666.1066.11510119.19180-0.850203.281502.53130HepG2UPF1
SYN3ENSG00000185666.1037.5378089.36290-1.251304.268102.90300HepG2XPO5
SYN3ENSG00000185666.1089.68850131.08770-0.547501.912101.43470HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYN3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SYN3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SYN3 is not avaliable on ENCORE database.