SUFU

General Information

Gene Name       : SUFU
Gene ID             : ENSG00000107882.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SUFU)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SUFUENSG00000107882.112.422.742.58ENCSR000AEF
HepG2SUFUENSG00000107882.115.764.725.24ENCSR985KAT
K562SUFUENSG00000107882.113.283.253.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SUFU is not avaliable on ENCORE database.



Proteins bound to RNA
  • SUFU RNA is bound by 5 proteins.  







eCLIP assay for SUFU is not avaliable on ENCORE database.





5 proteins are bound to SUFU RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10104379003104379100+3'-UTR,intron-Distal4.335104.83379HepG2HNRNPK
chr10104390419104390483+3'-UTR5.4223011.74696K562PABPC4
chr10104391002104391139+3'-UTR4.571075.05488HepG2QKI
chr10104378987104379075+3'-UTR,intron-Distal3.701693.77855HepG2DDX59
chr10104391053104391136+3'-UTR4.328933.88460HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SUFU is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SUFU is not available on ENCORE database.

  • 47 RBPs can affect the levels of SUFU.  








The Knockdown/knockout RNA-Seq assay for SUFU is not available on ENCORE database.





47 RBPs can affect the gene expression of SUFU :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SUFUENSG00000107882.7473.08100720.39390-0.606704.002503.37980HepG2AKAP1
SUFUENSG00000107882.7518.00070392.086900.401702.332701.77760HepG2BOP1
SUFUENSG00000107882.7591.74060421.216700.490303.449602.08210HepG2BUD13
SUFUENSG00000107882.7206.67980359.96290-0.800505.216504.29960HepG2CPSF6
SUFUENSG00000107882.7677.57800462.979400.549304.413503.03370HepG2CPSF7
SUFUENSG00000107882.7659.10150544.059000.276601.923401.36880HepG2CELF1
SUFUENSG00000107882.7598.16500429.053800.479304.080302.69470HepG2DDX1
SUFUENSG00000107882.7721.99120349.231701.047709.299307.97970HepG2DDX55
SUFUENSG00000107882.7306.28060420.71670-0.458003.156102.40910HepG2DNAJC21
SUFUENSG00000107882.7384.65390569.82710-0.567003.695203.01650HepG2EIF2S1
SUFUENSG00000107882.7495.26950331.959400.577103.339002.35090HepG2EIF3D
SUFUENSG00000107882.7415.26330629.67370-0.600604.030003.26230HepG2EIF4A3
SUFUENSG00000107882.7358.29870577.13420-0.687707.485706.23060HepG2EIF4G1
SUFUENSG00000107882.7414.10410552.85610-0.416902.447901.67950HepG2EIF4G2
SUFUENSG00000107882.7820.59390567.751400.531303.170402.35270HepG2FIP1L1
SUFUENSG00000107882.7610.29580428.128100.511402.646501.55440HepG2FUS
SUFUENSG00000107882.7442.57410625.84360-0.499903.297002.31890HepG2G3BP2
SUFUENSG00000107882.7541.64710377.304100.521505.193803.90270HepG2HDGF
SUFUENSG00000107882.7755.24040537.624700.490205.256704.03820HepG2HNRNPA2B1
SUFUENSG00000107882.7429.73840597.02580-0.474303.028902.29930HepG2HNRNPK
SUFUENSG00000107882.7368.76160599.09350-0.700105.352504.44060HepG2IGF2BP2
SUFUENSG00000107882.7321.40760479.39790-0.576805.854504.82430HepG2ILF2
SUFUENSG00000107882.7347.18170635.69490-0.872607.973906.87250HepG2MAGOH
SUFUENSG00000107882.7371.09300639.22720-0.784506.091705.18280HepG2MATR3
SUFUENSG00000107882.7627.36510459.437300.449302.994402.15360HepG2MSI2
SUFUENSG00000107882.7249.71530352.89870-0.499002.856601.41420HepG2NIP7
SUFUENSG00000107882.7227.53450345.28330-0.601703.067302.28070HepG2NSUN2
SUFUENSG00000107882.7431.27150582.56840-0.433802.465901.78040HepG2PABPC4
SUFUENSG00000107882.7685.84320567.815200.272402.001801.47260HepG2PCBP1
SUFUENSG00000107882.7367.30670587.38360-0.677306.571605.55410HepG2PUM2
SUFUENSG00000107882.7312.95040470.64890-0.588704.122602.89430HepG2RBM27
SUFUENSG00000107882.7327.63030429.19470-0.389602.048401.45010HepG2RPLP0
SUFUENSG00000107882.7326.63850417.95640-0.355702.292701.69740HepG2SAFB2
SUFUENSG00000107882.7224.61000324.17290-0.529302.732901.80070HepG2SERBP1
SUFUENSG00000107882.7402.16490601.52390-0.580805.803505.00030HepG2SF3B4
SUFUENSG00000107882.7376.02690487.41550-0.374303.017502.34930HepG2SMN1
SUFUENSG00000107882.7300.48790428.88570-0.513302.015501.35280HepG2SNRNP70
SUFUENSG00000107882.7508.40740627.87300-0.304502.127401.69700HepG2SRSF1
SUFUENSG00000107882.7389.40400510.81860-0.391502.984502.41550HepG2SRSF9
SUFUENSG00000107882.7363.83390541.22990-0.573003.609502.15770HepG2SSRP1
SUFUENSG00000107882.7172.51800347.62760-1.010806.964305.96840HepG2SUPV3L1
SUFUENSG00000107882.7265.64860564.39060-1.0872015.3166014.15620HepG2TAF15
SUFUENSG00000107882.7301.13940456.06320-0.598804.716404.09900HepG2TIAL1
SUFUENSG00000107882.7132.07670205.33570-0.636602.954002.17250HepG2UCHL5
SUFUENSG00000107882.7463.43430300.400300.625403.922503.24760K562AQR
SUFUENSG00000107882.7330.02890237.327300.475602.280601.50150K562FMR1
SUFUENSG00000107882.759.73450101.82050-0.769402.134501.52540K562G3BP2
SUFUENSG00000107882.7337.86990259.366900.381401.969501.45430K562RBM15
SUFUENSG00000107882.7266.49340175.727300.600703.166802.41470K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SUFU is not available on ENCORE database.





1 RBPs can affect the splicing of SUFU :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESUFUENSG00000107882.7chr10+1043855671043856931043770461043771851043869311043870000.203000.000040.00372includedHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SUFU is not avaliable on ENCORE database.