SNX19

General Information

Gene Name       : SNX19
Gene ID             : ENSG00000120451.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX19)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX19ENSG00000120451.1026.6924.2625.48ENCSR000AEF
HepG2SNX19ENSG00000120451.100.180.340.26ENCSR985KAT
K562SNX19ENSG00000120451.1015.8316.8516.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX19 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX19 RNA is bound by 5 proteins.  







eCLIP assay for SNX19 is not avaliable on ENCORE database.





5 proteins are bound to SNX19 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11130746755130746850-3'-UTR,intron-Distal3.748576.42260K562FAM120A
chr11130747077130747147-3'-UTR,intron-Distal6.240317.94582K562PUM2
chr11130746235130746335-3'-UTR,intron-Distal5.248579.58395K562FAM120A
chr11130746749130746780-3'-UTR,intron-Distal4.706345.24231K562UPF1
chr11130746260130746331-3'-UTR,intron-Distal3.7775411.41131K562UPF1
chr11130746053130746098-3'-UTR,intron-Distal4.841666.29854K562UPF1
chr11130746446130746483-3'-UTR,intron-Distal5.107376.77594K562FAM120A
chr11130746005130746023-3'-UTR,intron-Distal4.141693.54010K562UPF1
chr11130746780130746846-3'-UTR,intron-Distal5.5706810.81337K562UPF1
chr11130746146130746213-3'-UTR,intron-Distal5.254568.29991K562FAM120A
chr11130746434130746489-3'-UTR,intron-Distal4.010186.36782K562UPF1
chr11130786213130786357-5'-UTR,intron-Distal,intron-Proximal4.109954.46401K562DDX3X
chr11130785433130785496-CDS,intron-Distal3.932433.02572K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX19 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX19 is not available on ENCORE database.

  • 31 RBPs can affect the levels of SNX19.  








The Knockdown/knockout RNA-Seq assay for SNX19 is not available on ENCORE database.





31 RBPs can affect the gene expression of SNX19 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX19ENSG00000120451.679.953208.142903.2954010.532509.07020HepG2CNOT7
SNX19ENSG00000120451.628.670806.994402.035202.975902.28700HepG2G3BP1
SNX19ENSG00000120451.626.209604.711602.475703.071802.39480HepG2HNRNPA1
SNX19ENSG00000120451.6871.935601477.04680-0.7604017.3056016.00740K562AGGF1
SNX19ENSG00000120451.61254.401901622.93160-0.371603.451902.32580K562AKAP8
SNX19ENSG00000120451.61065.848401536.90480-0.528006.078205.08530K562AKAP8L
SNX19ENSG00000120451.61500.342601798.11420-0.261202.660601.57630K562CPEB4
SNX19ENSG00000120451.6632.14920842.08600-0.413703.324402.14940K562CSTF2
SNX19ENSG00000120451.62488.872901860.978500.419307.674706.66340K562DDX47
SNX19ENSG00000120451.61412.856801654.00420-0.227302.272001.48910K562DKC1
SNX19ENSG00000120451.61375.05350746.456300.881306.438204.85170K562EIF3A
SNX19ENSG00000120451.6982.72440789.182900.316302.192001.45780K562EIF4A3
SNX19ENSG00000120451.61298.24850820.716400.6615011.6058010.45340K562FXR1
SNX19ENSG00000120451.61681.124601317.849100.351103.058702.22510K562GPKOW
SNX19ENSG00000120451.61393.292301051.908400.405403.937103.24040K562HNRNPC
SNX19ENSG00000120451.6976.082501631.14320-0.7408011.331009.31180K562KIF1C
SNX19ENSG00000120451.61198.547601561.32180-0.381503.177002.00100K562MAK16
SNX19ENSG00000120451.61336.006101827.27800-0.451805.373704.02180K562MBNL1
SNX19ENSG00000120451.6839.443501280.78050-0.609504.615403.38500K562NAA15
SNX19ENSG00000120451.6672.89330996.93710-0.567102.342301.44620K562PABPN1
SNX19ENSG00000120451.61026.054701357.59220-0.403902.905101.31310K562PKM
SNX19ENSG00000120451.61403.478401857.61810-0.404403.674602.70840K562PPIG
SNX19ENSG00000120451.61086.352701524.39840-0.488704.641203.96130K562PUS1
SNX19ENSG00000120451.6945.174401485.12210-0.6519011.2558010.08050K562RBM15
SNX19ENSG00000120451.61502.342501034.231300.538604.614403.55750K562RPS19
SNX19ENSG00000120451.61369.59320927.353600.562505.134503.71160K562RPS3
SNX19ENSG00000120451.61660.511001298.964900.354202.344401.35280K562SAFB
SNX19ENSG00000120451.61762.807001500.054400.232802.135301.41150K562SF3A3
SNX19ENSG00000120451.61819.343201462.234000.315103.184402.30370K562SYNCRIP
SNX19ENSG00000120451.61281.150901007.938700.345902.516401.83920K562TARDBP
SNX19ENSG00000120451.61871.023601611.882600.215002.218301.57020K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX19 is not available on ENCORE database.





4 RBPs can affect the splicing of SNX19 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX19ENSG00000120451.6chr11-1307500631307502201307495181307496061307505161307510360.088000.002430.07150includedK562PRPF8
SESNX19ENSG00000120451.6chr11-1307500631307502201307495181307496061307505161307510360.057000.005200.04798includedK562AQR
SESNX19ENSG00000120451.6chr11-130773149130773279130750516130750701130775847130776028-0.104000.000750.00963excludedK562AQR
SESNX19ENSG00000120451.6chr11-1307782551307783401307778471307779781307799121307800320.295000.000000.00000includedK562PTBP1
SESNX19ENSG00000120451.6chr11-1307782551307783401307778471307779781307799121307800320.129000.000000.00008includedK562HNRNPC
SESNX19ENSG00000120451.6chr11-130779912130780032130777847130777978130780164130780265-0.145000.003230.04949excludedK562HNRNPC
A3SSSNX19ENSG00000120451.6chr11-1307758471307760641307758471307760281307765191307766160.060000.012110.06227longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX19 is not avaliable on ENCORE database.