RP11-96H19.1

General Information

Gene Name : RP11-96H19.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-96H19.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-96H19.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-96H19.1 RNA is bound by 16 proteins.

eCLIP assay for RP11-96H19.1 is not avaliable on ENCORE database.

16 proteins are bound to RP11-96H19.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	46794653	46794767	+	intron-Distal	4.43439	4.95197	K562	SAFB2
chr12	46791438	46791487	+	intron-Distal	3.64501	4.16915	HepG2	HLTF
chr12	46847506	46847572	+	intron-Distal	3.79680	5.09669	HepG2	QKI
chr12	46814109	46814170	+	intron-Distal	3.05558	4.29582	HepG2	HLTF
chr12	46777468	46777624	+	intron-Distal,intron-Proximal	4.93652	14.77806	HepG2	PRPF4
chr12	46830361	46830476	+	intron-Distal	3.44036	3.54232	HepG2	HNRNPL
chr12	46849471	46849538	+	intron-Distal,intron-Proximal	3.08682	4.63410	HepG2	SUGP2
chr12	46845312	46845368	+	intron-Distal	4.86551	9.03914	K562	PTBP1
chr12	46794472	46794557	+	intron-Distal	4.29614	4.58306	K562	SAFB2
chr12	46794239	46794358	+	intron-Distal	3.35205	6.76076	K562	SAFB2
chr12	46844836	46844910	+	intron-Distal	6.63515	11.47623	HepG2	PCBP2
chr12	46811900	46812006	+	intron-Distal	3.94870	3.74251	K562	SAFB2
chr12	46823156	46823271	+	intron-Distal	3.21495	4.08075	K562	SAFB2
chr12	46791505	46791609	+	intron-Distal	4.24247	4.51328	K562	SAFB2
chr12	46835065	46835141	+	intron-Distal	4.06454	3.57543	K562	ILF3
chr12	46823239	46823297	+	intron-Distal	3.02352	4.35275	HepG2	HLTF
chr12	46812045	46812101	+	intron-Distal	3.13605	3.54017	HepG2	HLTF
chr12	46812333	46812366	+	intron-Distal	4.27007	4.42137	HepG2	HLTF
chr12	46795490	46795605	+	intron-Distal	3.54513	14.77423	HepG2	HNRNPL
chr12	46845266	46845370	+	intron-Distal	5.56603	24.82812	HepG2	PTBP1
chr12	46777513	46777602	+	intron-Distal,intron-Proximal	4.26357	3.77360	K562	GTF2F1
chr12	46844080	46844115	+	intron-Distal	4.03948	3.27829	HepG2	MATR3
chr12	46821133	46821207	+	intron-Distal	3.29037	5.86900	HepG2	HLTF
chr12	46825808	46825881	+	intron-Distal	3.22046	3.85440	HepG2	HNRNPC
chr12	46835067	46835131	+	intron-Distal	5.21750	5.75114	HepG2	PTBP1
chr12	46814170	46814221	+	intron-Distal	4.50453	4.15056	HepG2	HLTF
chr12	46794358	46794470	+	intron-Distal	4.83751	7.97284	K562	SAFB2
chr12	46846368	46846436	+	intron-Distal	5.29229	8.94626	HepG2	QKI
chr12	46839555	46839638	+	intron-Distal	3.90886	5.18845	HepG2	U2AF2
chr12	46777725	46777803	+	intron-Distal	3.94619	3.17740	K562	CSTF2T
chr12	46834911	46834955	+	intron-Distal	3.54086	3.89405	HepG2	PTBP1
chr12	46777465	46777574	+	intron-Proximal	5.48606	10.13111	HepG2	NCBP2
chr12	46777490	46777570	+	intron-Proximal	3.76338	3.03048	HepG2	GTF2F1
chr12	46777528	46777590	+	intron-Proximal	3.16525	3.73797	K562	CSTF2T
chr12	46777481	46777574	+	intron-Proximal	3.47015	3.31500	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-96H19.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-96H19.1 is not available on ENCORE database.
24 RBPs can affect the levels of RP11-96H19.1.

The Knockdown/knockout RNA-Seq assay for RP11-96H19.1 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-96H19.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-96H19.1	ENSG00000257261.1	82.74600	35.53550	1.21930	3.60940	2.93590	HepG2	BOP1
RP11-96H19.1	ENSG00000257261.1	66.73410	32.62440	1.03240	2.42340	1.77410	HepG2	CPSF6
RP11-96H19.1	ENSG00000257261.1	42.33190	17.41160	1.28160	2.17940	1.56950	HepG2	DDX21
RP11-96H19.1	ENSG00000257261.1	79.62850	32.67840	1.28480	2.48010	1.52200	HepG2	FTO
RP11-96H19.1	ENSG00000257261.1	107.70760	36.98490	1.54200	5.68170	4.78620	HepG2	GPKOW
RP11-96H19.1	ENSG00000257261.1	7.43800	37.04460	-2.31630	3.89660	3.08050	HepG2	HNRNPK
RP11-96H19.1	ENSG00000257261.1	39.39790	17.67860	1.15600	2.14880	1.54490	HepG2	HNRNPL
RP11-96H19.1	ENSG00000257261.1	70.73740	35.29510	1.00290	2.24270	1.67010	HepG2	HNRNPLL
RP11-96H19.1	ENSG00000257261.1	13.01780	39.67470	-1.60770	2.58790	1.97620	HepG2	MATR3
RP11-96H19.1	ENSG00000257261.1	115.68640	42.53000	1.44360	6.32070	5.09140	HepG2	RBM15
RP11-96H19.1	ENSG00000257261.1	92.96720	38.17090	1.28420	4.03570	3.23630	HepG2	RPLP0
RP11-96H19.1	ENSG00000257261.1	50.17090	12.61880	1.99120	5.20440	4.37010	HepG2	SAFB2
RP11-96H19.1	ENSG00000257261.1	13.98240	41.90160	-1.58340	3.18780	2.46270	HepG2	SF3A3
RP11-96H19.1	ENSG00000257261.1	116.02310	38.87270	1.57750	2.49110	1.75070	HepG2	SNRNP70
RP11-96H19.1	ENSG00000257261.1	93.23740	37.58780	1.31050	3.63690	2.47410	HepG2	SRSF3
RP11-96H19.1	ENSG00000257261.1	15.76150	34.28350	-1.12110	1.78250	1.32230	HepG2	SRSF9
RP11-96H19.1	ENSG00000257261.1	78.44020	43.26510	0.85830	2.42170	1.53820	HepG2	SUPT6H
RP11-96H19.1	ENSG00000257261.1	47.42200	6.14720	2.94750	4.90970	4.04840	HepG2	SUPV3L1
RP11-96H19.1	ENSG00000257261.1	37.17940	13.76030	1.43390	2.51850	2.03810	HepG2	TIAL1
RP11-96H19.1	ENSG00000257261.1	37.63090	75.19880	-0.99880	2.47310	1.93120	K562	AGGF1
RP11-96H19.1	ENSG00000257261.1	44.69690	93.02530	-1.05740	3.65720	2.58740	K562	MBNL1
RP11-96H19.1	ENSG00000257261.1	55.28970	23.90790	1.20940	2.02260	1.31240	K562	PCBP3
RP11-96H19.1	ENSG00000257261.1	35.55630	77.59760	-1.12590	2.89800	2.34470	K562	PUS1
RP11-96H19.1	ENSG00000257261.1	61.44490	27.15720	1.17790	2.97800	2.23190	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-96H19.1 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-96H19.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A5SS	RP11-96H19.1	ENSG00000257261.1	chr12	+	46777461	46777496			46777461	46777478	46781529	46781755	0.39900	0.00044	0.08385	longer	K562	DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-96H19.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-96H19.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-96H19.1 is not avaliable on ENCORE database.

16 proteins are bound to RP11-96H19.1 RNA:

eCLIP assay for RP11-96H19.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-96H19.1 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-96H19.1 :

The Knockdown/knockout RNA-Seq assay for RP11-96H19.1 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-96H19.1 :

The Knockdown/knockout RNA-Seq assay for RP11-96H19.1 is not avaliable on ENCORE database.