RP11-613M10.8

General Information

Gene Name : RP11-613M10.8
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-613M10.8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-613M10.8 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-613M10.8 RNA is bound by 14 proteins.

eCLIP assay for RP11-613M10.8 is not avaliable on ENCORE database.

14 proteins are bound to RP11-613M10.8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	37588734	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.82496	5.61495	HepG2	ZNF800
chr9	37588739	37588913	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.85813	20.04909	HepG2	LARP4
chr9	37588856	37588913	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.12082	8.06909	HepG2	GRWD1
chr9	37588795	37588854	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.94345	7.31178	K562	ZNF800
chr9	37588916	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.41449	4.60160	HepG2	LARP4
chr9	37592454	37592459	-	CDS,intron-Distal	3.19108	18.83239	K562	YBX3
chr9	37592416	37592423	-	CDS,intron-Distal	3.76862	39.39276	K562	YBX3
chr9	37588913	37588930	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.27968	7.65887	HepG2	GRWD1
chr9	37592423	37592444	-	CDS,intron-Distal	3.63889	39.54044	K562	YBX3
chr9	37592405	37592463	-	CDS,intron-Distal	3.19940	32.79604	K562	DDX3X
chr9	37588916	37588929	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.81197	16.13519	K562	YBX3
chr9	37592404	37592470	-	CDS,intron-Distal,intron-Proximal	3.92414	9.64287	HepG2	LARP4
chr9	37592407	37592443	-	CDS,intron-Distal	3.15930	6.66900	HepG2	GRWD1
chr9	37592444	37592454	-	CDS,intron-Distal	3.20656	23.07972	K562	YBX3
chr9	37592407	37592410	-	CDS,intron-Distal	3.60312	17.27582	K562	YBX3
chr9	37556910	37557003	-	intron-Distal	3.97464	3.12651	K562	SAFB2
chr9	37569772	37569892	-	intron-Distal	4.24503	3.50357	HepG2	QKI
chr9	37592473	37592498	-	CDS,intron-Distal,intron-Proximal	3.76822	36.31073	K562	DDX3X
chr9	37592480	37592535	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.65779	5.90734	HepG2	DDX3X
chr9	37588545	37588636	-	3'-UTR,intron-Distal,intron-Proximal	3.69156	6.35062	K562	IGF2BP1
chr9	37592498	37592582	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.11260	46.95413	K562	DDX3X
chr9	37592535	37592590	-	5'-UTR,intron-Distal,intron-Proximal	3.44430	4.61051	HepG2	DDX3X
chr9	37587618	37587701	-	intron-Distal	4.30593	4.66266	K562	TARDBP
chr9	37592468	37592547	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.26714	10.69984	K562	UCHL5
chr9	37588457	37588553	-	3'-UTR,intron-Distal,intron-Proximal	3.03190	7.05804	K562	UPF1
chr9	37569551	37569657	-	intron-Distal	3.97003	3.25538	K562	KHSRP
chr9	37588566	37588665	-	3'-UTR,intron-Distal,intron-Proximal	4.45993	400.00000	K562	PUM2
chr9	37588533	37588631	-	3'-UTR,intron-Distal,intron-Proximal	4.94959	5.41332	K562	PUM1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-613M10.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-613M10.8 is not available on ENCORE database.
19 RBPs can affect the levels of RP11-613M10.8.

The Knockdown/knockout RNA-Seq assay for RP11-613M10.8 is not available on ENCORE database.

19 RBPs can affect the gene expression of RP11-613M10.8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-613M10.8	ENSG00000256966.2	0.81330	16.96250	-4.38240	3.53690	2.94490	HepG2	AKAP1
RP11-613M10.8	ENSG00000256966.2	1.00150	13.33480	-3.73500	2.49780	1.75840	HepG2	CIRBP
RP11-613M10.8	ENSG00000256966.2	0.00000	16.25070	-99999.99999	4.92430	4.10900	HepG2	DDX3X
RP11-613M10.8	ENSG00000256966.2	0.00000	13.41990	-99999.99999	3.67740	2.99990	HepG2	EIF2S1
RP11-613M10.8	ENSG00000256966.2	1.88610	14.83270	-2.97530	2.48420	1.87750	HepG2	EIF4A3
RP11-613M10.8	ENSG00000256966.2	0.50930	13.88020	-4.76850	3.39550	2.66200	HepG2	G3BP1
RP11-613M10.8	ENSG00000256966.2	0.52530	13.72260	-4.70720	3.31910	2.53320	HepG2	PABPC4
RP11-613M10.8	ENSG00000256966.2	0.00000	6.89710	-99999.99999	1.98460	1.44180	HepG2	QKI
RP11-613M10.8	ENSG00000256966.2	8.31870	0.60970	3.77000	1.82340	1.39090	HepG2	SRFBP1
RP11-613M10.8	ENSG00000256966.2	0.00000	6.21850	-99999.99999	1.78730	1.31740	HepG2	TAF15
RP11-613M10.8	ENSG00000256966.2	6.27180	26.40730	-2.07400	2.70010	2.13780	K562	AGGF1
RP11-613M10.8	ENSG00000256966.2	62.49120	24.67930	1.34030	2.77930	2.19000	K562	AQR
RP11-613M10.8	ENSG00000256966.2	33.96870	6.15600	2.46400	4.26580	3.53790	K562	FXR1
RP11-613M10.8	ENSG00000256966.2	105.70830	29.96770	1.81850	8.62280	6.68260	K562	HNRNPL
RP11-613M10.8	ENSG00000256966.2	9.28140	29.16460	-1.65180	2.58670	1.79160	K562	KIF1C
RP11-613M10.8	ENSG00000256966.2	29.36800	5.91280	2.31220	3.45790	2.07220	K562	NCBP2
RP11-613M10.8	ENSG00000256966.2	9.24500	27.25950	-1.56000	2.11580	1.62810	K562	PUS1
RP11-613M10.8	ENSG00000256966.2	9.35410	26.55180	-1.50510	1.89700	1.38960	K562	RBM15
RP11-613M10.8	ENSG00000256966.2	62.00900	29.23900	1.08450	2.61250	1.36370	K562	WRN
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-613M10.8 is not available on ENCORE database.

3 RBPs can affect the splicing of RP11-613M10.8 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	RP11-613M10.8	ENSG00000256966.2	chr9	-	37592287	37592466	37592306	37592466	37588807	37588929	0.34400	0.00094	0.03651	longer	K562	PUS1
A5SS	RP11-613M10.8	ENSG00000256966.2	chr9	-	37592249	37592466	37592287	37592466	37588807	37588929	0.61400	0.00000	0.00000	longer	K562	AQR
A5SS	RP11-613M10.8	ENSG00000256966.2	chr9	-	37592287	37592466	37592306	37592466	37588807	37588929	-0.22400	0.00264	0.04260	shorter	K562	AQR
A5SS	RP11-613M10.8	ENSG00000256966.2	chr9	-	37592287	37592466	37592306	37592466	37588807	37588929	-0.34000	0.00106	0.06172	shorter	HepG2	SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-613M10.8

General Information

Functions

Localization

Domains (AlphaFold: RP11-613M10.8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-613M10.8 is not avaliable on ENCORE database.

14 proteins are bound to RP11-613M10.8 RNA:

eCLIP assay for RP11-613M10.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-613M10.8 is not available on ENCORE database.

19 RBPs can affect the gene expression of RP11-613M10.8 :

The Knockdown/knockout RNA-Seq assay for RP11-613M10.8 is not available on ENCORE database.

3 RBPs can affect the splicing of RP11-613M10.8 :

The Knockdown/knockout RNA-Seq assay for RP11-613M10.8 is not avaliable on ENCORE database.