RP11-552F3.12

General Information

Gene Name       : RP11-552F3.12
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-552F3.12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-552F3.12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-552F3.12 RNA is bound by 23 proteins.  







eCLIP assay for RP11-552F3.12 is not avaliable on ENCORE database.





23 proteins are bound to RP11-552F3.12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177390075873900801-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.185943.67794HepG2DDX3X
chr177389735173897414-3'-UTR,CDS,intron-Distal,intron-Proximal4.1254414.01870HepG2SF3B4
chr177389724373897292-3'-UTR,CDS,intron-Distal,intron-Proximal3.387537.20533HepG2EFTUD2
chr177389572373895807-3'-UTR,CDS,intron-Distal,intron-Proximal4.3160217.05551K562SF3B4
chr177389793173898002-3'-UTR,CDS,intron-Distal,intron-Proximal3.941737.70159HepG2SRSF1
chr177389575473895836-3'-UTR,CDS,intron-Distal,intron-Proximal3.142814.67783HepG2SF3B4
chr177389565973895723-3'-UTR,CDS,intron-Distal,intron-Proximal3.517715.84135HepG2PCBP2
chr177389698973897073-3'-UTR,CDS,intron-Distal,intron-Proximal4.604397.82456K562SF3B4
chr177389771973897807-3'-UTR,CDS,intron-Distal,intron-Proximal3.334668.38944K562PRPF8
chr177389795273898002-3'-UTR,CDS,intron-Distal,intron-Proximal4.346823.94601K562PCBP1
chr177389819973898268-3'-UTR,CDS,intron-Distal,intron-Proximal3.466593.03452HepG2U2AF2
chr177390075673900806-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.753673.42611HepG2SRSF1
chr177389698973897066-3'-UTR,CDS,intron-Distal,intron-Proximal5.2805918.60178HepG2PRPF8
chr177389564673895694-3'-UTR,CDS,intron-Distal,intron-Proximal3.941593.61671HepG2PABPN1
chr177389730273897378-3'-UTR,CDS,intron-Distal,intron-Proximal3.2016510.14158HepG2BUD13
chr177389810173898166-3'-UTR,CDS,intron-Distal3.033766.91015HepG2GRWD1
chr177389494173895010-3'-UTR,CDS,intron-Distal,intron-Proximal3.952316.51752K562PABPC4
chr177389555373895606-3'-UTR,CDS,intron-Distal,intron-Proximal4.181137.08947HepG2PRPF8
chr177390076673900819-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.9171927.37289K562SF3B4
chr177390076273900852-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.6464314.23729K562EFTUD2
chr177389810073898175-3'-UTR,CDS,intron-Distal,intron-Proximal5.152339.47642K562PCBP1
chr177390075173900801-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.817479.27595K562DDX3X
chr177389506573895241-3'-UTR,CDS,intron-Distal,intron-Proximal4.0092611.40182HepG2PRPF8
chr177389793773898002-3'-UTR,CDS,intron-Distal,intron-Proximal3.075288.74848HepG2PPIG
chr177389734173897411-3'-UTR,CDS,intron-Distal,intron-Proximal3.9568713.64049HepG2SF3A3
chr177390076373900828-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3340622.64813HepG2PRPF8
chr177389810173898232-3'-UTR,CDS,intron-Distal3.002913.49055K562GRWD1
chr177389519973895242-3'-UTR,CDS,intron-Distal,intron-Proximal4.968786.38747HepG2AQR
chr177389477473894828-3'-UTR,intron-Distal4.700874.89487HepG2LARP4
chr177389781173897877-3'-UTR,CDS,intron-Distal,intron-Proximal3.054703.22540HepG2G3BP1
chr177389726873897339-3'-UTR,CDS,intron-Distal,intron-Proximal3.056304.75490HepG2GRWD1
chr177389728073897316-3'-UTR,CDS,intron-Distal,intron-Proximal5.9074812.18059HepG2PPIG
chr177389816273898236-3'-UTR,CDS,intron-Distal,intron-Proximal3.681665.69815HepG2G3BP1
chr177389521673895243-3'-UTR,CDS,intron-Distal,intron-Proximal4.172064.15711K562AQR
chr177390075973900853-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.895723.46348HepG2XRN2
chr177389707273897108-3'-UTR,CDS,intron-Distal,intron-Proximal3.668133.12746HepG2GRWD1
chr177389733673897415-3'-UTR,CDS,intron-Distal,intron-Proximal3.841367.17119K562SF3B4
chr177390076073900856-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.3870710.72725K562BUD13
chr177389817773898235-3'-UTR,CDS,intron-Distal4.855475.66159K562LIN28B
chr177389565973895756-3'-UTR,CDS,intron-Distal,intron-Proximal4.750507.19218K562PCBP1
chr177389473973894880-3'-UTR,intron-Distal6.3966525.55192K562PABPC4
chr177390077073900855-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.646026.03140HepG2PRPF4
chr177389794973898001-3'-UTR,CDS,intron-Distal,intron-Proximal4.219528.68179HepG2BUD13
chr177389496773895064-3'-UTR,CDS,intron-Distal,intron-Proximal5.367169.73587HepG2PABPN1
chr177389496073895063-3'-UTR,CDS,intron-Distal,intron-Proximal4.062565.65050K562DDX55
chr177390076173900855-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.1352212.39952HepG2EFTUD2
chr177389706673897106-3'-UTR,CDS,intron-Distal,intron-Proximal4.048066.23016HepG2PRPF8
chr177389474473894782-3'-UTR,intron-Distal5.559035.06516K562PUM2
chr177390075273900866-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.521535.54036HepG2AQR
chr177389706073897109-3'-UTR,CDS,intron-Distal,intron-Proximal3.7212711.11819HepG2PPIG
chr177389775473897803-3'-UTR,CDS,intron-Distal,intron-Proximal4.9304012.77088HepG2PRPF8
chr177390075973900860-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2601727.80585HepG2BUD13
chr177390061673900674-5'-UTR,CDS,intron-Distal,intron-Proximal3.099674.79633HepG2G3BP1
chr177390063573900744-5'-UTR,CDS,intron-Distal,intron-Proximal4.746076.37834K562BUD13
chr177390068773900719-5'-UTR,CDS,intron-Distal,intron-Proximal3.591508.85042HepG2GRWD1
chr177390064773900687-5'-UTR,CDS,intron-Distal,intron-Proximal3.819347.12207HepG2GRWD1
chr177390064873900738-5'-UTR,CDS,intron-Distal,intron-Proximal3.2899012.87034HepG2PPIG
chr177390062173900741-5'-UTR,CDS,intron-Distal,intron-Proximal3.745043.05347HepG2UCHL5
chr177389727373897281-intron-Distal,intron-Proximal4.583569.08333HepG2PRPF8
chr177390088973900966-5'-UTR,CDS,intron-Distal,intron-Proximal4.365449.06301K562DDX3X
chr177389510173895189-intron-Distal,intron-Proximal3.431934.80460HepG2AQR
chr177389554073895581-intron-Distal,intron-Proximal4.127143.85435K562PRPF8
chr177389711173897164-intron-Distal,intron-Proximal3.324425.25867HepG2SF3B4
chr177391613073916218-CDS,intron-Distal,intron-Proximal5.6707110.43516HepG2PRPF8
chr177390093073900972-5'-UTR,CDS,intron-Distal,intron-Proximal4.190237.77439HepG2DDX3X
chr177391614773916226-CDS,intron-Distal,intron-Proximal5.360597.23718K562AQR
chr177389726173897281-intron-Distal,intron-Proximal3.831154.89208K562AQR
chr177389701573897063-intron-Distal,intron-Proximal3.560865.75231K562AQR
chr177389737473897429-intron-Distal,intron-Proximal4.5653610.18833HepG2EFTUD2
chr177389519273895216-intron-Distal,intron-Proximal5.221835.26064K562AQR
chr177390088773900930-CDS,intron-Distal,intron-Proximal3.458086.07214HepG2DDX3X
chr177389698373897044-intron-Distal,intron-Proximal5.3513518.74293HepG2EFTUD2
chr177391615873916324-CDS,intron-Distal,intron-Proximal4.353017.60779HepG2AQR
chr177389698873897059-intron-Distal,intron-Proximal4.815965.55733K562BUD13
chr177391630773916359-3'-UTR,CDS,intron-Distal,intron-Proximal4.241275.43815HepG2PRPF8
chr177390082873900855-intron-Distal,intron-Proximal4.431319.10443HepG2PRPF8
chr177390081973900850-intron-Distal,intron-Proximal5.5824322.64205K562SF3B4
chr177389723773897273-intron-Distal,intron-Proximal4.7932610.85246HepG2PRPF8
chr177389539173895436-intron-Distal,intron-Proximal3.370984.09623HepG2SF3B4
chr177389723973897261-intron-Distal,intron-Proximal3.916114.98250K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-552F3.12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-552F3.12 is not available on ENCORE database.

  • 31 RBPs can affect the levels of RP11-552F3.12.  








The Knockdown/knockout RNA-Seq assay for RP11-552F3.12 is not available on ENCORE database.





31 RBPs can affect the gene expression of RP11-552F3.12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-552F3.12ENSG00000267426.133.548308.390501.999302.490401.57230HepG2CCAR1
RP11-552F3.12ENSG00000267426.17.962100.0000099999.999902.379501.43900HepG2YBX3
RP11-552F3.12ENSG00000267426.10.0000014.08340-99999.999993.474702.38070HepG2DDX59
RP11-552F3.12ENSG00000267426.16.320300.0000099999.999902.098201.51550HepG2DNAJC2
RP11-552F3.12ENSG00000267426.131.891005.275802.595602.473901.74210HepG2FIP1L1
RP11-552F3.12ENSG00000267426.111.797800.0000099999.999903.084502.35730HepG2HNRNPC
RP11-552F3.12ENSG00000267426.10.0000013.41100-99999.999993.338002.65350HepG2HNRNPLL
RP11-552F3.12ENSG00000267426.15.982900.0000099999.999901.805801.30690HepG2HNRNPU
RP11-552F3.12ENSG00000267426.17.207500.0000099999.999902.158801.50210HepG2ILF2
RP11-552F3.12ENSG00000267426.18.616700.0000099999.999902.569401.75080HepG2PARN
RP11-552F3.12ENSG00000267426.125.899401.500004.109806.091104.59520HepG2PCBP2
RP11-552F3.12ENSG00000267426.121.279202.657203.001403.056802.43570HepG2PUF60
RP11-552F3.12ENSG00000267426.125.912305.390002.265202.743702.22740HepG2RBM22
RP11-552F3.12ENSG00000267426.10.0000017.24610-99999.999993.871503.08420HepG2RBM25
RP11-552F3.12ENSG00000267426.10.0000010.62380-99999.999993.078402.36410HepG2RPLP0
RP11-552F3.12ENSG00000267426.11.2430019.06660-3.939102.770402.29700HepG2SRSF1
RP11-552F3.12ENSG00000267426.126.268000.0000099999.999908.089607.31620HepG2TIAL1
RP11-552F3.12ENSG00000267426.149.1029010.882502.173704.367603.66210K562AQR
RP11-552F3.12ENSG00000267426.123.408804.949402.241602.462501.47920K562CCAR1
RP11-552F3.12ENSG00000267426.111.9316041.38220-1.794203.112501.97690K562CNOT7
RP11-552F3.12ENSG00000267426.124.654501.134004.442305.861903.26920K562DDX24
RP11-552F3.12ENSG00000267426.115.755201.085203.859703.747802.16060K562DDX6
RP11-552F3.12ENSG00000267426.141.208505.686702.857205.721004.38010K562EFTUD2
RP11-552F3.12ENSG00000267426.115.881301.177403.753503.243201.91870K562EIF2S1
RP11-552F3.12ENSG00000267426.146.437801.118605.3755011.223609.54650K562EIF4A3
RP11-552F3.12ENSG00000267426.113.115001.008203.701303.282502.00150K562EIF4B
RP11-552F3.12ENSG00000267426.116.992801.163403.868403.651502.97130K562FXR1
RP11-552F3.12ENSG00000267426.10.000007.45470-99999.999992.121901.51470K562G3BP2
RP11-552F3.12ENSG00000267426.13.2784037.77470-3.526406.017103.86130K562ILF2
RP11-552F3.12ENSG00000267426.10.0000013.43760-99999.999992.750901.87670K562METAP2
RP11-552F3.12ENSG00000267426.132.964805.533902.574503.780102.90380K562PRPF8
RP11-552F3.12ENSG00000267426.15.9037036.91220-2.644404.411302.37180K562RPS3A
RP11-552F3.12ENSG00000267426.12.3869015.33430-2.683502.299201.55010K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-552F3.12 is not available on ENCORE database.





9 RBPs can affect the splicing of RP11-552F3.12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900394738981007389823573900620739008000.149000.000080.00242includedK562SF3B4
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900394738981007389823573900620739008000.095000.000550.02350includedK562PRPF8
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900394738981007389823573900620739008000.121000.000000.00000includedK562AQR
SERP11-552F3.12ENSG00000267426.1chr17-738970627389710873895596738957557389779273898001-0.135000.000000.00000excludedK562AQR
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900394738981007389823573900620739008000.151000.000000.00022includedK562EFTUD2
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900450738981007389823573900620739008000.069000.003550.07047includedK562RBM15
SERP11-552F3.12ENSG00000267426.1chr17-739003027390039473898100738982357390062073900800-0.091000.000110.02670excludedK562EIF3G
SERP11-552F3.12ENSG00000267426.1chr17-7390030273900394738981007389823573900620739008000.115000.000270.06492includedK562SERBP1
SERP11-552F3.12ENSG00000267426.1chr17-7389685473896919738955967389575573897062738971080.065000.000000.00017includedK562HNRNPC
A3SSRP11-552F3.12ENSG00000267426.1chr17-7389523873895464738952387389537573895596738957550.120000.000000.00000longerK562AQR
A3SSRP11-552F3.12ENSG00000267426.1chr17-738977927389800173897792738979977389810073898235-0.112000.002050.01316shorterK562AQR
MXERP11-552F3.12ENSG00000267426.1chr17-73897281738973547389779273897997738970627389710873898100738982350.149000.000280.003021includedK562AQR
MXERP11-552F3.12ENSG00000267426.1chr17-7389559673895755738972817389735473895238738953757389779273897997-0.144000.000180.013862includedHepG2BCCIP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-552F3.12 is not avaliable on ENCORE database.