RP11-197N18.2

General Information

Gene Name : RP11-197N18.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-197N18.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-197N18.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-197N18.2 RNA is bound by 14 proteins.

eCLIP assay for RP11-197N18.2 is not avaliable on ENCORE database.

14 proteins are bound to RP11-197N18.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	123460512	123460583	+	intron-Distal,intron-Proximal	4.18381	3.83943	K562	HNRNPK
chr12	123466905	123466970	+	intron-Distal,intron-Proximal	4.06745	4.38582	HepG2	XRN2
chr12	123466403	123466427	+	CDS,intron-Proximal	3.75556	10.31073	K562	ZNF622
chr12	123466317	123466427	+	3'-UTR,CDS,intron-Proximal	3.29330	14.83875	K562	PUM1
chr12	123466398	123466427	+	CDS,intron-Proximal	3.21623	5.37652	K562	BUD13
chr12	123466502	123466553	+	CDS,intron-Proximal	4.23175	29.79653	HepG2	PPIG
chr12	123466501	123466552	+	CDS,intron-Proximal	3.38741	10.91500	K562	UCHL5
chr12	123466303	123466430	+	3'-UTR,CDS,intron-Proximal	3.02082	6.09668	HepG2	ZNF800
chr12	123466553	123466622	+	3'-UTR,CDS,intron-Proximal	3.91102	19.76589	HepG2	PPIG
chr12	123460452	123460495	+	intron-Distal,intron-Proximal	4.76838	5.17615	K562	AQR
chr12	123466419	123466427	+	CDS,intron-Proximal	4.48313	19.79860	HepG2	PPIG
chr12	123466347	123466428	+	3'-UTR,CDS,intron-Proximal	3.36806	3.16179	HepG2	FXR2
chr12	123466486	123466503	+	intron-Proximal	5.48936	6.41139	HepG2	EFTUD2
chr12	123466350	123466428	+	3'-UTR,CDS,intron-Proximal	4.76708	4.55101	HepG2	PRPF4
chr12	123466318	123466427	+	3'-UTR,CDS,intron-Proximal	3.49523	13.22605	HepG2	GRWD1
chr12	123466569	123466622	+	3'-UTR,CDS,intron-Proximal	4.64035	6.24350	K562	PABPC4
chr12	123467015	123467084	+	3'-UTR,CDS,intron-Proximal	3.27906	8.98272	HepG2	GRWD1
chr12	123466397	123466427	+	CDS,intron-Proximal	4.63637	15.04433	K562	UCHL5
chr12	123466503	123466545	+	CDS,intron-Proximal	3.08645	6.21720	K562	BUD13
chr12	123466502	123466511	+	CDS,intron-Proximal	3.10582	5.20111	HepG2	GRWD1
chr12	123463131	123463198	+	intron-Proximal	5.08240	6.04760	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-197N18.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-197N18.2 is not available on ENCORE database.
47 RBPs can affect the levels of RP11-197N18.2.

The Knockdown/knockout RNA-Seq assay for RP11-197N18.2 is not available on ENCORE database.

47 RBPs can affect the gene expression of RP11-197N18.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-197N18.2	ENSG00000256028.2	161.51750	222.09580	-0.45950	2.15520	1.60400	HepG2	ACO1
RP11-197N18.2	ENSG00000256028.2	94.17920	156.16070	-0.72960	2.32140	1.82970	HepG2	AKAP1
RP11-197N18.2	ENSG00000256028.2	148.04080	223.14170	-0.59200	3.12680	2.31760	HepG2	AKAP8L
RP11-197N18.2	ENSG00000256028.2	74.32400	129.19560	-0.79770	2.30900	1.58890	HepG2	ASCC1
RP11-197N18.2	ENSG00000256028.2	226.55230	114.26760	0.98730	3.66830	2.59050	HepG2	BCCIP
RP11-197N18.2	ENSG00000256028.2	167.41870	104.44640	0.68060	2.23820	1.36950	HepG2	CCAR1
RP11-197N18.2	ENSG00000256028.2	149.29300	212.48620	-0.50920	2.23360	1.61410	HepG2	DKC1
RP11-197N18.2	ENSG00000256028.2	196.66230	123.50370	0.67110	2.52380	1.95720	HepG2	EIF2S1
RP11-197N18.2	ENSG00000256028.2	211.44900	127.75470	0.72680	2.33700	1.72270	HepG2	G3BP1
RP11-197N18.2	ENSG00000256028.2	273.08130	129.49170	1.07640	6.89620	5.83150	HepG2	HNRNPK
RP11-197N18.2	ENSG00000256028.2	151.29360	226.21940	-0.58040	3.12990	2.48320	HepG2	PUS1
RP11-197N18.2	ENSG00000256028.2	162.56840	102.13080	0.67050	2.54870	1.95340	HepG2	RECQL
RP11-197N18.2	ENSG00000256028.2	189.63230	102.60960	0.88590	2.17060	1.63750	HepG2	SF3B4
RP11-197N18.2	ENSG00000256028.2	138.76540	88.45380	0.64960	2.30300	1.53840	HepG2	TIA1
RP11-197N18.2	ENSG00000256028.2	119.52250	66.04400	0.85570	2.54700	1.81970	HepG2	UCHL5
RP11-197N18.2	ENSG00000256028.2	103.16000	193.38960	-0.90660	5.02330	4.25700	HepG2	UTP3
RP11-197N18.2	ENSG00000256028.2	70.87210	111.18880	-0.64970	2.01670	1.42950	HepG2	ZC3H8
RP11-197N18.2	ENSG00000256028.2	165.80510	220.30010	-0.41000	1.87570	1.40140	HepG2	ZNF622
RP11-197N18.2	ENSG00000256028.2	459.36010	735.66280	-0.67940	3.35330	2.73970	K562	AGGF1
RP11-197N18.2	ENSG00000256028.2	438.11110	765.51480	-0.80510	4.38090	3.55240	K562	AKAP8L
RP11-197N18.2	ENSG00000256028.2	716.52370	494.18780	0.53590	3.97160	3.29340	K562	AQR
RP11-197N18.2	ENSG00000256028.2	141.08370	211.00670	-0.58070	2.34740	1.39380	K562	CCAR1
RP11-197N18.2	ENSG00000256028.2	189.26420	96.48480	0.97190	2.46350	1.72000	K562	CPSF6
RP11-197N18.2	ENSG00000256028.2	507.42520	863.13570	-0.76640	3.78240	2.06260	K562	DDX19B
RP11-197N18.2	ENSG00000256028.2	234.70120	344.48130	-0.55360	3.79680	3.05080	K562	DDX47
RP11-197N18.2	ENSG00000256028.2	571.35360	404.77320	0.49720	4.35950	3.48390	K562	EIF2S2
RP11-197N18.2	ENSG00000256028.2	111.63340	214.63170	-0.94310	3.32440	2.21320	K562	EIF3A
RP11-197N18.2	ENSG00000256028.2	230.97570	164.44500	0.49000	2.04800	1.31500	K562	FIP1L1
RP11-197N18.2	ENSG00000256028.2	102.52180	198.15380	-0.95070	3.41570	2.14720	K562	FKBP4
RP11-197N18.2	ENSG00000256028.2	41.42550	3.47330	3.57600	5.44310	2.47880	K562	FXR2
RP11-197N18.2	ENSG00000256028.2	79.17130	204.55340	-1.36940	8.05870	6.72620	K562	G3BP2
RP11-197N18.2	ENSG00000256028.2	147.49060	228.26610	-0.63010	2.81990	2.21740	K562	HNRNPC
RP11-197N18.2	ENSG00000256028.2	349.42800	222.94430	0.64820	3.92260	2.97880	K562	HSPD1
RP11-197N18.2	ENSG00000256028.2	611.72010	910.01260	-0.57300	2.73980	1.83670	K562	MBNL1
RP11-197N18.2	ENSG00000256028.2	415.13430	330.26560	0.32990	2.00450	1.35710	K562	NSUN2
RP11-197N18.2	ENSG00000256028.2	400.81860	224.73990	0.83460	4.86200	2.74450	K562	NUSAP1
RP11-197N18.2	ENSG00000256028.2	367.29710	222.85360	0.72080	4.28460	2.45080	K562	PHF6
RP11-197N18.2	ENSG00000256028.2	314.54340	186.68610	0.75250	4.89030	3.75220	K562	PPIG
RP11-197N18.2	ENSG00000256028.2	461.72180	204.66270	1.17370	13.07780	10.82100	K562	PSIP1
RP11-197N18.2	ENSG00000256028.2	187.60380	339.55520	-0.85600	3.41190	2.68330	K562	PTBP1
RP11-197N18.2	ENSG00000256028.2	312.58430	759.00700	-1.27990	6.70580	5.90280	K562	PUS1
RP11-197N18.2	ENSG00000256028.2	91.33700	195.15830	-1.09540	3.04890	1.55260	K562	RAVER1
RP11-197N18.2	ENSG00000256028.2	394.06150	739.68190	-0.90850	5.16100	4.37380	K562	RBM15
RP11-197N18.2	ENSG00000256028.2	614.63980	334.48700	0.87770	3.98340	2.30310	K562	SFPQ
RP11-197N18.2	ENSG00000256028.2	252.82590	177.00600	0.51420	2.24970	1.34590	K562	SRFBP1
RP11-197N18.2	ENSG00000256028.2	302.82380	204.31930	0.56760	2.81500	1.75060	K562	SRSF4
RP11-197N18.2	ENSG00000256028.2	458.86760	314.50980	0.54490	2.63140	1.61240	K562	SRSF5
RP11-197N18.2	ENSG00000256028.2	493.46920	336.84930	0.55080	2.59830	1.91100	K562	TARDBP
RP11-197N18.2	ENSG00000256028.2	510.51750	324.95110	0.65160	2.42160	1.66150	K562	TIA1
RP11-197N18.2	ENSG00000256028.2	125.56560	254.11100	-1.01700	4.13420	1.94720	K562	TRNAU1AP
RP11-197N18.2	ENSG00000256028.2	125.88160	204.74130	-0.70170	3.58790	2.67220	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-197N18.2 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-197N18.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
RI	RP11-197N18.2	ENSG00000256028.2	chr12	+	123461417	123463116			123461417	123461517	123462906	123463116	0.27200	0.00847	0.07484	included	HepG2	HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-197N18.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-197N18.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-197N18.2 is not avaliable on ENCORE database.

14 proteins are bound to RP11-197N18.2 RNA:

eCLIP assay for RP11-197N18.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-197N18.2 is not available on ENCORE database.

47 RBPs can affect the gene expression of RP11-197N18.2 :

The Knockdown/knockout RNA-Seq assay for RP11-197N18.2 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-197N18.2 :

The Knockdown/knockout RNA-Seq assay for RP11-197N18.2 is not avaliable on ENCORE database.