RAB4B-EGLN2

General Information

Gene Name : RAB4B-EGLN2
Gene ID : ENSG00000171570.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB4B-EGLN2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB4B-EGLN2	ENSG00000171570.11	0.00	0.68	0.34	ENCSR000AEF
HepG2	RAB4B-EGLN2	ENSG00000171570.11	0.14	0.14	0.14	ENCSR985KAT
K562	RAB4B-EGLN2	ENSG00000171570.11	0.81	0.35	0.58	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB4B-EGLN2 is not avaliable on ENCORE database.

Proteins bound to RNA

RAB4B-EGLN2 RNA is bound by 23 proteins.

eCLIP assay for RAB4B-EGLN2 is not avaliable on ENCORE database.

23 proteins are bound to RAB4B-EGLN2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	41313969	41314047	+	3'-UTR,intron-Distal,intron-Proximal	3.01753	3.44337	K562	METAP2
chr19	41307100	41307171	+	3'-UTR,CDS	3.12280	5.47824	K562	CSTF2T
chr19	41306231	41306295	+	3'-UTR,5'-UTR,intron-Proximal	3.16293	4.05586	HepG2	U2AF2
chr19	41314085	41314157	+	3'-UTR,intron-Distal	3.22150	3.76433	K562	DDX6
chr19	41306754	41306805	+	3'-UTR,CDS	4.31870	4.32860	K562	METAP2
chr19	41307318	41307342	+	3'-UTR,CDS,intron-Proximal	5.16736	6.44303	K562	AQR
chr19	41313759	41313880	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.03349	8.84200	K562	PABPC4
chr19	41314063	41314165	+	3'-UTR,intron-Distal,intron-Proximal	5.42239	8.05720	K562	UPF1
chr19	41306923	41306975	+	3'-UTR,CDS	3.33521	3.80158	K562	NONO
chr19	41314068	41314169	+	3'-UTR,intron-Distal	4.47243	3.87357	K562	EWSR1
chr19	41307218	41307321	+	3'-UTR,CDS,intron-Proximal	3.44090	3.09251	K562	METAP2
chr19	41313663	41313727	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.15948	5.68247	K562	SF3B4
chr19	41312988	41313067	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37709	3.64784	K562	EWSR1
chr19	41306416	41306475	+	3'-UTR,5'-UTR	3.25211	4.14880	HepG2	CSTF2T
chr19	41306898	41306978	+	3'-UTR,CDS	4.13697	12.33599	K562	CSTF2T
chr19	41306516	41306567	+	3'-UTR,CDS	3.63616	3.14867	K562	DDX55
chr19	41307091	41307198	+	3'-UTR,CDS	3.19777	4.33160	K562	FUS
chr19	41312534	41312580	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.11172	3.50044	K562	YBX3
chr19	41306235	41306282	+	3'-UTR,5'-UTR,intron-Proximal	3.61525	4.35148	K562	U2AF1
chr19	41313959	41314003	+	3'-UTR,intron-Distal,intron-Proximal	3.99002	3.51664	K562	RBM15
chr19	41306853	41306885	+	3'-UTR,CDS	3.48910	3.73797	K562	CSTF2T
chr19	41313041	41313059	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.02564	3.07714	K562	YBX3
chr19	41286003	41286076	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86059	7.30031	K562	AQR
chr19	41286373	41286441	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.60770	4.02817	HepG2	PRPF8
chr19	41286245	41286309	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.52731	4.13847	K562	AQR
chr19	41284513	41284627	+	intron-Distal	4.32590	3.86417	HepG2	PRPF4
chr19	41310369	41310516	+	intron-Distal	3.71135	6.33414	K562	FUS
chr19	41309721	41309765	+	intron-Distal	3.14476	4.58795	K562	EWSR1
chr19	41305889	41305951	+	5'-UTR,intron-Distal,intron-Proximal	5.10267	7.38423	HepG2	PCBP2
chr19	41310918	41310997	+	intron-Distal	3.48603	7.34646	K562	NONO
chr19	41305378	41305448	+	5'-UTR,intron-Distal	3.82125	5.39685	HepG2	CSTF2T
chr19	41310738	41310806	+	intron-Distal	3.81938	3.80037	K562	FUS
chr19	41312631	41312685	+	intron-Distal,intron-Proximal	4.06719	3.30664	K562	NONO
chr19	41305401	41305457	+	5'-UTR,intron-Distal	5.17520	8.31268	K562	CSTF2T
chr19	41309954	41310112	+	intron-Distal	3.50500	9.04624	K562	FUS
chr19	41307458	41307510	+	intron-Distal	4.14904	4.27402	K562	CSTF2T
chr19	41305368	41305454	+	5'-UTR,intron-Distal	4.28795	6.85082	HepG2	FAM120A
chr19	41310921	41310985	+	intron-Distal	3.79847	4.81215	K562	EWSR1
chr19	41311282	41311321	+	intron-Distal	3.35186	4.48425	K562	CSTF2T
chr19	41311046	41311108	+	intron-Distal	3.54119	4.47051	K562	EWSR1
chr19	41309943	41310073	+	intron-Distal	3.60395	8.60539	K562	EWSR1
chr19	41313548	41313700	+	3'-UTR,intron-Distal,intron-Proximal	5.23358	9.72234	K562	HNRNPK
chr19	41310957	41311083	+	intron-Distal	3.06374	3.63437	HepG2	HNRNPM
chr19	41310916	41311002	+	intron-Distal	3.52266	8.66194	K562	CSTF2T
chr19	41305986	41306053	+	5'-UTR,intron-Distal	3.89133	3.34601	K562	HNRNPK
chr19	41309735	41309776	+	intron-Distal	3.37277	3.74491	K562	CSTF2T
chr19	41308055	41308150	+	intron-Distal	4.57971	10.59779	K562	GTF2F1
chr19	41313569	41313666	+	3'-UTR,intron-Distal,intron-Proximal	4.20358	4.10192	HepG2	HNRNPK
chr19	41305388	41305446	+	5'-UTR,intron-Distal	3.18488	3.18246	K562	PRPF8
chr19	41310895	41310975	+	intron-Distal	4.32929	5.52774	K562	FUS
chr19	41308181	41308272	+	intron-Distal	3.29297	5.64759	K562	NONO
chr19	41305400	41305459	+	5'-UTR,intron-Distal	4.13023	4.85687	K562	DROSHA
chr19	41308277	41308354	+	intron-Distal	3.63967	6.95413	HepG2	PCBP2
chr19	41305199	41305252	+	intron-Distal,intron-Proximal	3.97754	3.94684	HepG2	CSTF2T
chr19	41310449	41310511	+	intron-Distal	3.09241	3.58403	K562	EWSR1
chr19	41309226	41309262	+	intron-Distal,intron-Proximal	3.41932	4.02206	K562	CSTF2T
chr19	41312902	41313006	+	intron-Distal,intron-Proximal	3.33194	6.01711	K562	CSTF2T
chr19	41308080	41308147	+	intron-Distal	3.11028	4.67846	K562	EWSR1
chr19	41307342	41307361	+	intron-Proximal	4.16736	5.63763	K562	AQR
chr19	41312583	41312654	+	intron-Distal,intron-Proximal	4.61151	5.68502	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RAB4B-EGLN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB4B-EGLN2 is not available on ENCORE database.
15 RBPs can affect the levels of RAB4B-EGLN2.

The Knockdown/knockout RNA-Seq assay for RAB4B-EGLN2 is not available on ENCORE database.

15 RBPs can affect the gene expression of RAB4B-EGLN2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB4B-EGLN2	ENSG00000171570.6	0.00000	12.62730	-99999.99999	3.77540	2.99600	HepG2	AUH
RAB4B-EGLN2	ENSG00000171570.6	11.37960	0.00000	99999.99990	3.51020	2.80420	HepG2	CELF1
RAB4B-EGLN2	ENSG00000171570.6	8.75590	0.00000	99999.99990	2.99240	2.22550	HepG2	DAZAP1
RAB4B-EGLN2	ENSG00000171570.6	11.00130	0.00000	99999.99990	2.89430	1.50600	HepG2	DDX52
RAB4B-EGLN2	ENSG00000171570.6	9.17560	0.00000	99999.99990	3.08110	2.39870	HepG2	DNAJC2
RAB4B-EGLN2	ENSG00000171570.6	11.61260	0.00000	99999.99990	3.74870	1.81400	HepG2	FMR1
RAB4B-EGLN2	ENSG00000171570.6	0.39550	14.11710	-5.15780	2.37810	1.47450	HepG2	IGF2BP3
RAB4B-EGLN2	ENSG00000171570.6	1.56580	15.12880	-3.27230	2.59250	1.62560	HepG2	KHSRP
RAB4B-EGLN2	ENSG00000171570.6	2.82530	16.04720	-2.50580	2.04340	1.49630	HepG2	MATR3
RAB4B-EGLN2	ENSG00000171570.6	0.42610	16.42470	-5.26860	4.09970	3.33300	HepG2	NCBP2
RAB4B-EGLN2	ENSG00000171570.6	9.01810	0.29130	4.95240	2.46700	1.80560	HepG2	SRSF7
RAB4B-EGLN2	ENSG00000171570.6	31.56600	0.00000	99999.99990	2.04140	1.32820	HepG2	UBE2L3
RAB4B-EGLN2	ENSG00000171570.6	14.25780	0.92610	3.94440	2.76360	2.17570	K562	AQR
RAB4B-EGLN2	ENSG00000171570.6	8.19390	0.00000	99999.99990	2.60860	1.58460	K562	HNRNPL
RAB4B-EGLN2	ENSG00000171570.6	23.19560	5.04750	2.20010	2.45960	1.75120	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB4B-EGLN2 is not available on ENCORE database.

4 RBPs can affect the splicing of RAB4B-EGLN2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41313388	41313456			41313042	41313179	41313713	41314103	-0.09500	0.00000	0.00072	excluded	K562	SUPV3L1
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41313042	41313179	41313388	41313456	41312459	41312579	41313713	41314103	0.12900	0.00424	0.09136	1included	K562	EFTUD2
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41312459	41312579	41313042	41313179	41306243	41307320	41313388	41313456	0.12700	0.00064	0.02393	1included	K562	EFTUD2
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41312459	41312579	41313388	41313456	41306243	41307320	41313713	41314103	0.10500	0.00090	0.02985	1included	K562	EFTUD2
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41312459	41312579	41313042	41313179	41306243	41307320	41313388	41313456	0.11700	0.00070	0.02664	1included	K562	SBDS
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41312459	41312579	41313042	41313179	41306243	41307320	41313388	41313456	0.13700	0.00028	0.00871	1included	K562	PRPF8
MXE	RAB4B-EGLN2	ENSG00000171570.6	chr19	+	41312459	41312579	41313042	41313179	41306243	41307320	41313388	41313456	0.31900	0.00000	0.00000	1included	K562	SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB4B-EGLN2

General Information

Functions

Localization

Domains (AlphaFold: RAB4B-EGLN2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB4B-EGLN2 is not avaliable on ENCORE database.

23 proteins are bound to RAB4B-EGLN2 RNA:

eCLIP assay for RAB4B-EGLN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB4B-EGLN2 is not available on ENCORE database.

15 RBPs can affect the gene expression of RAB4B-EGLN2 :

The Knockdown/knockout RNA-Seq assay for RAB4B-EGLN2 is not available on ENCORE database.

4 RBPs can affect the splicing of RAB4B-EGLN2 :

The Knockdown/knockout RNA-Seq assay for RAB4B-EGLN2 is not avaliable on ENCORE database.