NENF

General Information

Gene Name       : NENF
Gene ID             : ENSG00000117691.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NENF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NENFENSG00000117691.922.3925.2523.82ENCSR000AEF
HepG2NENFENSG00000117691.926.4324.1125.27ENCSR985KAT
K562NENFENSG00000117691.943.2635.9139.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NENF is not avaliable on ENCORE database.



Proteins bound to RNA
  • NENF RNA is bound by 7 proteins.  







eCLIP assay for NENF is not avaliable on ENCORE database.





7 proteins are bound to NENF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1212619341212619414+3'-UTR,CDS3.341274.48159HepG2LARP4
chr1212619422212619451+3'-UTR3.993763.15159HepG2LARP4
chr1212606273212606317+5'-UTR,CDS4.3387610.44075K562DDX3X
chr1212606260212606329+5'-UTR,CDS4.406966.63665K562GEMIN5
chr1212606279212606398+5'-UTR,CDS5.8435155.10367HepG2DDX3X
chr1212617709212617725+CDS3.600043.48680K562PABPC4
chr1212617682212617731+CDS3.7381212.39892K562DDX3X
chr1212619218212619268+CDS4.1093912.35757K562PUM2
chr1212606290212606362+CDS4.963538.74631K562PABPC4
chr1212606423212606461+CDS3.674025.22400HepG2DDX3X
chr1212619227212619280+CDS3.4519611.92570K562YBX3
chr1212617730212617746+CDS3.131157.86167K562YBX3
chr1212619204212619223+CDS3.454428.81743K562YBX3
chr1212619171212619194+CDS,intron-Proximal4.2365919.73995K562YBX3
chr1212617725212617779+CDS3.878579.96973K562PABPC4
chr1212619194212619204+CDS5.0279525.25681K562YBX3
chr1212606317212606410+CDS5.4529223.04581K562DDX3X
chr1212606412212606460+CDS5.1034421.94099K562DDX3X
chr1212606362212606412+CDS4.9270010.44987K562PABPC4
chr1212617775212617784+CDS4.4610722.99581K562YBX3
chr1212617906212617958+intron-Distal5.154986.42318K562EIF4G2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NENF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NENF is not available on ENCORE database.

  • 43 RBPs can affect the levels of NENF.  








The Knockdown/knockout RNA-Seq assay for NENF is not available on ENCORE database.





43 RBPs can affect the gene expression of NENF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NENFENSG00000117691.5251.60680154.428400.704102.572301.66380HepG2ABCF1
NENFENSG00000117691.5302.96820200.892500.592604.114603.40090HepG2ACO1
NENFENSG00000117691.5469.91840335.971000.484002.289901.80130HepG2AKAP1
NENFENSG00000117691.5267.91670393.69380-0.555303.930103.13820HepG2AUH
NENFENSG00000117691.5282.09730200.821800.490202.907202.22960HepG2CKAP4
NENFENSG00000117691.577.71800169.86470-1.128104.652703.65680HepG2CNOT7
NENFENSG00000117691.5266.29080185.784400.519303.324502.41950HepG2DDX19B
NENFENSG00000117691.5127.92700193.46200-0.596702.270001.56330HepG2DDX55
NENFENSG00000117691.5257.86670192.192700.424001.947101.36390HepG2DKC1
NENFENSG00000117691.5138.93720285.96490-1.041405.479404.53440HepG2EIF4B
NENFENSG00000117691.5319.30220452.00110-0.501403.658802.98330HepG2ETF1
NENFENSG00000117691.5224.35340126.081200.831303.866802.91420HepG2MSI2
NENFENSG00000117691.587.33200177.71070-1.024903.879702.56930HepG2NONO
NENFENSG00000117691.5175.13600271.74400-0.633803.073002.31380HepG2PABPC4
NENFENSG00000117691.5142.27820262.16930-0.881805.876505.01430HepG2QKI
NENFENSG00000117691.5154.88120237.92210-0.619303.116702.40550HepG2RBM25
NENFENSG00000117691.5298.03090141.610801.073402.997602.29460HepG2SF3A3
NENFENSG00000117691.5110.74690184.24020-0.734303.066401.35810HepG2SRP68
NENFENSG00000117691.581.50680129.06070-0.663102.322401.40270HepG2TFIP11
NENFENSG00000117691.5189.89520121.249700.647102.925502.31280HepG2UTP3
NENFENSG00000117691.593.06850148.50600-0.674202.734802.06630HepG2ZC3H8
NENFENSG00000117691.51071.50980570.660400.9088019.4692018.08020K562AGGF1
NENFENSG00000117691.5885.45960627.082800.497704.600903.25890K562AKAP8
NENFENSG00000117691.5936.05020593.801300.656507.330106.22120K562AKAP8L
NENFENSG00000117691.5860.80610681.959900.335902.735001.56770K562CCDC124
NENFENSG00000117691.5597.43480747.58290-0.323502.676001.96620K562EIF2S2
NENFENSG00000117691.5807.37920383.275301.0748015.2110013.06230K562FIP1L1
NENFENSG00000117691.5619.01740459.701400.429203.624602.94670K562FXR1
NENFENSG00000117691.5180.40150350.93560-0.960002.574801.89750K562G3BP2
NENFENSG00000117691.51392.08490996.124700.482704.880603.87830K562GRSF1
NENFENSG00000117691.5537.54930315.242100.769805.894504.46950K562HNRNPM
NENFENSG00000117691.5857.91160630.160100.445003.930402.92530K562KIF1C
NENFENSG00000117691.5777.10090603.227600.365302.461801.46730K562MAK16
NENFENSG00000117691.5704.02290563.575600.320902.114201.31720K562MATR3
NENFENSG00000117691.5972.09370705.940100.461404.382303.18910K562MBNL1
NENFENSG00000117691.5785.22710410.942000.934104.860203.44350K562PABPN1
NENFENSG00000117691.5568.91660400.216400.507304.159603.17470K562POLR2G
NENFENSG00000117691.5732.83470435.082800.752107.743206.22070K562PPIG
NENFENSG00000117691.5790.81440488.633200.694502.767001.33280K562PPP1R8
NENFENSG00000117691.5712.90130504.350200.499203.449302.61070K562PRPF8
NENFENSG00000117691.51136.92350588.864600.9490013.7485012.58260K562PUS1
NENFENSG00000117691.5952.69370573.779200.7314010.936509.77890K562RBM15
NENFENSG00000117691.5351.54590503.67030-0.518803.425101.57210K562SRP68
NENFENSG00000117691.5659.71450524.849100.329802.670001.74720K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NENF is not available on ENCORE database.





6 RBPs can affect the splicing of NENF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.118000.000150.00250excludedK562AQR
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.119000.000150.00354excludedK562PUS1
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.146000.000090.02035excludedK562NSUN2
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.115000.000720.02674excludedK562UTP18
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.089000.002540.07606excludedK562HNRNPU
SENENFENSG00000117691.5chr1+212615906212615967212606228212606462212617680212617784-0.452000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NENF is not avaliable on ENCORE database.