JMJD7

General Information

Gene Name       : JMJD7
Gene ID             : ENSG00000243789.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: JMJD7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878JMJD7ENSG00000243789.100.543.612.08ENCSR000AEF
HepG2JMJD7ENSG00000243789.106.682.344.51ENCSR985KAT
K562JMJD7ENSG00000243789.106.774.585.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for JMJD7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • JMJD7 RNA is bound by 10 proteins.  







eCLIP assay for JMJD7 is not avaliable on ENCORE database.





10 proteins are bound to JMJD7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154212945242129569+3'-UTR,5'-UTR,intron-Distal3.092434.95235HepG2SRSF9
chr154212952142129604+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.139614.22598K562CSTF2T
chr154212967842129761+3'-UTR,intron-Distal3.291103.40562HepG2SRSF9
chr154212951242129593+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.016953.31074K562BUD13
chr154212950742129573+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.507606.87242K562DDX24
chr154212950942129617+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.398053.87268K562SRSF1
chr154212941342129502+3'-UTR,5'-UTR,intron-Distal3.935123.24881HepG2SRSF1
chr154212874242128797+CDS,intron-Proximal4.673335.35117HepG2PRPF8
chr154212778742127841+CDS5.155756.16445HepG2PPIG
chr154212894542129011+CDS,intron-Distal,intron-Proximal3.366163.13705K562BUD13
chr154212780842127957+CDS,intron-Distal,intron-Proximal5.459986.69228HepG2PRPF8
chr154212737342127422+CDS,intron-Proximal3.327745.58370HepG2PPIG
chr154212831042128354+CDS,intron-Proximal4.073683.31283K562PRPF8
chr154212789142127958+intron-Distal,intron-Proximal5.374888.34710K562AQR
chr154212396542124061+intron-Distal3.405183.56085K562LSM11
chr154212877342128845+intron-Proximal3.676914.95247K562PRPF8
chr154212784342127891+intron-Proximal5.116076.83960K562AQR
chr154212041742120468+intron-Proximal3.770934.04185HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for JMJD7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for JMJD7 is not available on ENCORE database.

  • 31 RBPs can affect the levels of JMJD7.  








The Knockdown/knockout RNA-Seq assay for JMJD7 is not available on ENCORE database.





31 RBPs can affect the gene expression of JMJD7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
JMJD7ENSG00000243789.6126.8642055.388401.195502.244701.39220HepG2ABCF1
JMJD7ENSG00000243789.694.6845057.424600.721402.122401.43830HepG2AKAP8L
JMJD7ENSG00000243789.671.6689034.204901.067003.195702.50300HepG2DNAJC2
JMJD7ENSG00000243789.614.4253055.85380-1.953105.350004.18940HepG2EWSR1
JMJD7ENSG00000243789.672.3794035.890501.011902.330401.74680HepG2HNRNPLL
JMJD7ENSG00000243789.672.8010038.509900.918602.424201.85370HepG2HNRNPU
JMJD7ENSG00000243789.6144.8736065.428501.146705.859104.89630HepG2PUM2
JMJD7ENSG00000243789.641.00320101.00660-1.300604.912104.27130HepG2RBM22
JMJD7ENSG00000243789.690.2399049.640800.862102.213701.49790HepG2RPS3A
JMJD7ENSG00000243789.680.5951034.297901.232504.065903.31090HepG2SAFB2
JMJD7ENSG00000243789.640.8481073.35570-0.844601.992401.47750HepG2SF3B4
JMJD7ENSG00000243789.677.2408040.002300.949201.872801.32610HepG2SMN1
JMJD7ENSG00000243789.671.4655038.482200.893002.196101.35300HepG2SMNDC1
JMJD7ENSG00000243789.612.32990114.07760-3.2098019.3336018.32250HepG2SRFBP1
JMJD7ENSG00000243789.630.6056076.56450-1.322903.767903.23780HepG2SRSF1
JMJD7ENSG00000243789.626.5639068.81110-1.373204.146103.48070HepG2TAF15
JMJD7ENSG00000243789.670.1147037.439300.905102.150901.69920HepG2TIAL1
JMJD7ENSG00000243789.612.4078047.79070-1.945501.954201.41630HepG2U2AF1
JMJD7ENSG00000243789.694.1406044.594301.077903.274202.52570HepG2UPF1
JMJD7ENSG00000243789.6116.3753049.045901.246505.889305.16930HepG2ZNF622
JMJD7ENSG00000243789.646.53870109.53180-1.234803.716803.05680K562AQR
JMJD7ENSG00000243789.6106.8296046.098801.212403.605902.06960K562DDX27
JMJD7ENSG00000243789.6147.9654087.845000.752103.089802.33680K562EIF2S2
JMJD7ENSG00000243789.617.3436040.88100-1.237002.050001.31010K562FMR1
JMJD7ENSG00000243789.6167.5890083.665601.002104.494603.48640K562HSPD1
JMJD7ENSG00000243789.6103.6689048.327001.101002.793101.76330K562IGF2BP2
JMJD7ENSG00000243789.6122.03690206.11010-0.756103.973202.85100K562MBNL1
JMJD7ENSG00000243789.684.6633049.380100.777702.239701.63230K562PTBP1
JMJD7ENSG00000243789.694.0366045.703801.040802.716501.67920K562SRSF5
JMJD7ENSG00000243789.688.5830048.997900.854202.445801.77810K562TARDBP
JMJD7ENSG00000243789.694.5631046.355601.028403.170001.98790K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for JMJD7 is not available on ENCORE database.






No RBPs affect the alternative splcing events of JMJD7 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for JMJD7 is not avaliable on ENCORE database.