HLA-F

General Information

Gene Name       : HLA-F
Gene ID             : ENSG00000204642.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HLA-F)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HLA-FENSG00000204642.1318.5659.6439.10ENCSR000AEF
HepG2HLA-FENSG00000204642.135.041.713.38ENCSR985KAT
K562HLA-FENSG00000204642.130.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HLA-F is not avaliable on ENCORE database.



Proteins bound to RNA
  • HLA-F RNA is bound by 3 proteins.  







eCLIP assay for HLA-F is not avaliable on ENCORE database.





3 proteins are bound to HLA-F RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62969328129693332+CDS3.276447.88496HepG2RPS3
chr62969294529692979+CDS,intron-Distal4.697755.84094HepG2SND1
chr62969327729693337+CDS3.1492017.65030HepG2SND1
chr62969303329693078+CDS,intron-Distal5.2209014.92860HepG2SND1
chr62969328429693339+CDS3.061154.36051HepG2LIN28B
chr62969323929693267+CDS3.402413.30795HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HLA-F is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HLA-F is not available on ENCORE database.

  • 41 RBPs can affect the levels of HLA-F.  








The Knockdown/knockout RNA-Seq assay for HLA-F is not available on ENCORE database.





41 RBPs can affect the gene expression of HLA-F :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HLA-FENSG00000204642.9161.2820060.998001.402707.148805.91580HepG2ASCC1
HLA-FENSG00000204642.9136.3856047.248901.529204.305803.07550HepG2CCAR1
HLA-FENSG00000204642.959.7664027.331101.128702.163801.49220HepG2CNOT7
HLA-FENSG00000204642.9128.1167044.142401.537109.081107.86110HepG2DAZAP1
HLA-FENSG00000204642.9116.8196070.619900.726002.025301.48120HepG2DDX3X
HLA-FENSG00000204642.9113.5228060.660500.904102.715902.10430HepG2DDX6
HLA-FENSG00000204642.9130.2643066.157000.977404.026303.23880HepG2DKC1
HLA-FENSG00000204642.975.3363018.149402.053308.097407.05540HepG2DNAJC2
HLA-FENSG00000204642.999.3122060.320100.719201.909101.35160HepG2G3BP1
HLA-FENSG00000204642.966.6928025.120101.408603.324402.62750HepG2GPKOW
HLA-FENSG00000204642.995.7932018.480402.373804.927004.09810HepG2HNRNPA1
HLA-FENSG00000204642.952.5960020.558001.355202.613701.93790HepG2HNRNPC
HLA-FENSG00000204642.963.1742033.647000.908802.086501.45760HepG2HNRNPF
HLA-FENSG00000204642.980.5940020.421901.980508.019907.02860HepG2HNRNPU
HLA-FENSG00000204642.968.7815033.132401.053702.735502.01590HepG2IGF2BP1
HLA-FENSG00000204642.966.6977026.642701.323803.219001.77790HepG2ILF3
HLA-FENSG00000204642.9110.9338061.670700.846902.306201.40300HepG2KHSRP
HLA-FENSG00000204642.9122.6959063.201600.957004.229302.98110HepG2KIF1C
HLA-FENSG00000204642.9145.0271050.247401.529106.916004.96350HepG2KRR1
HLA-FENSG00000204642.9152.6466066.951001.188905.183404.32860HepG2NCBP2
HLA-FENSG00000204642.9102.2946043.772501.224505.188704.14830HepG2NOL12
HLA-FENSG00000204642.9167.2898064.621901.372209.005008.01270HepG2PCBP1
HLA-FENSG00000204642.981.5069041.789600.963702.820102.21870HepG2PUF60
HLA-FENSG00000204642.9134.7617044.331301.603908.878007.71000HepG2PUM2
HLA-FENSG00000204642.9126.6332070.436100.846203.492702.81900HepG2PUS1
HLA-FENSG00000204642.97.6938033.58510-2.126102.282701.63830HepG2RAVER1
HLA-FENSG00000204642.9112.3236068.168400.720402.284301.71780HepG2RECQL
HLA-FENSG00000204642.9107.6264027.433301.971908.274306.91420HepG2RPS3A
HLA-FENSG00000204642.947.4951018.185501.384903.050302.38000HepG2SAFB2
HLA-FENSG00000204642.999.4104030.247001.716503.544401.96490HepG2SF1
HLA-FENSG00000204642.980.4983040.081601.005903.254402.50400HepG2SLBP
HLA-FENSG00000204642.957.3218093.47070-0.705401.825501.39280HepG2SRFBP1
HLA-FENSG00000204642.975.5256041.268100.871802.500401.90110HepG2SRSF5
HLA-FENSG00000204642.986.7780033.058001.392205.091804.19270HepG2SRSF7
HLA-FENSG00000204642.9208.9060081.152501.3640010.850109.96410HepG2SSB
HLA-FENSG00000204642.971.6311023.377901.615304.597903.69510HepG2TARDBP
HLA-FENSG00000204642.961.6488020.021601.622405.000804.28760HepG2TRIM56
HLA-FENSG00000204642.981.5594043.230600.915702.030501.31940HepG2UBE2L3
HLA-FENSG00000204642.960.8639020.707401.555302.645701.66460HepG2UPF2
HLA-FENSG00000204642.952.3260024.571401.090402.310501.31700HepG2XPO5
HLA-FENSG00000204642.9136.6979022.279002.6171011.7566010.28620HepG2XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HLA-F is not available on ENCORE database.






No RBPs affect the alternative splcing events of HLA-F on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HLA-F is not avaliable on ENCORE database.