GLCCI1

General Information

Gene Name       : GLCCI1
Gene ID             : ENSG00000106415.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GLCCI1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GLCCI1ENSG00000106415.1225.6423.2724.45ENCSR000AEF
HepG2GLCCI1ENSG00000106415.123.982.353.17ENCSR985KAT
K562GLCCI1ENSG00000106415.125.535.465.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GLCCI1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GLCCI1 RNA is bound by 12 proteins.  







eCLIP assay for GLCCI1 is not avaliable on ENCORE database.





12 proteins are bound to GLCCI1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr781269978127082+3'-UTR,intron-Distal4.635037.56405K562PUM2
chr781285718128610+3'-UTR,intron-Distal3.974063.95344K562PUM2
chr781284698128531+3'-UTR,intron-Distal5.219995.76540K562PUM2
chr780950388095109+CDS,intron-Proximal4.607496.14774K562U2AF2
chr780436238043694+CDS,intron-Proximal3.006213.01994K562BUD13
chr780222788022350+intron-Distal3.790804.72639K562KHSRP
chr781042518104276+intron-Distal4.235283.30696K562EXOSC5
chr781059208105970+intron-Distal6.1472516.65497K562EXOSC5
chr780223648022424+intron-Distal4.173743.66668K562KHSRP
chr780209098020974+intron-Distal,intron-Proximal5.915288.42544K562PTBP1
chr780195628019620+intron-Distal5.422538.88784K562PTBP1
chr780840128084076+intron-Distal3.827963.25633K562PPIL4
chr781063568106408+intron-Distal4.123423.28572K562HNRNPM
chr780226888022755+intron-Distal4.181713.45805K562KHSRP
chr781054578105497+intron-Distal4.393317.91405K562EXOSC5
chr780897068089860+intron-Distal4.543674.13641K562TARDBP
chr781049328105049+intron-Distal4.1838411.84791K562EXOSC5
chr781089028109002+intron-Distal4.590875.31171K562HNRNPM
chr781048108104843+intron-Distal4.591983.89080K562EXOSC5
chr780139268014018+intron-Distal4.473064.96658K562KHSRP
chr780119618012046+intron-Distal3.646905.63970K562TARDBP
chr781060558106103+intron-Distal4.138547.01333K562EXOSC5
chr780914068091580+intron-Distal3.775063.24603K562KHSRP
chr780743718074523+intron-Distal4.359715.44813K562PPIL4
chr780664328066546+intron-Distal3.214953.55860K562SAFB2
chr781068798106921+intron-Distal5.380899.35180K562EXOSC5
chr781060438106122+intron-Distal4.253283.23532K562MATR3
chr781087668108851+intron-Distal4.255944.53244K562HNRNPM
chr780226158022676+intron-Distal3.138553.28806K562KHSRP
chr780224278022486+intron-Distal3.081883.96958K562KHSRP
chr780182378018303+intron-Distal3.799513.24603K562KHSRP
chr781072508107300+intron-Distal4.500984.80399K562EXOSC5
chr781065758106610+intron-Distal4.714545.76685K562EXOSC5
chr780113688011432+intron-Distal4.176614.48935K562CSTF2T
chr781061038106152+intron-Distal4.2111911.23387K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GLCCI1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GLCCI1 is not available on ENCORE database.

  • 41 RBPs can affect the levels of GLCCI1.  








The Knockdown/knockout RNA-Seq assay for GLCCI1 is not available on ENCORE database.





41 RBPs can affect the gene expression of GLCCI1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GLCCI1ENSG00000106415.864.73100110.73120-0.774501.944701.48960HepG2AKAP1
GLCCI1ENSG00000106415.848.7538085.41530-0.809002.006601.34240HepG2CALR
GLCCI1ENSG00000106415.8237.9475091.875301.372807.526806.27530HepG2CNOT7
GLCCI1ENSG00000106415.836.3929067.40920-0.889302.060601.48200HepG2DNAJC2
GLCCI1ENSG00000106415.8154.6095085.040800.862303.101401.91980HepG2GRSF1
GLCCI1ENSG00000106415.851.1964094.67730-0.887002.836402.10260HepG2IGF2BP1
GLCCI1ENSG00000106415.835.1009077.48400-1.142403.717202.88010HepG2ILF2
GLCCI1ENSG00000106415.884.26120130.02840-0.625902.239101.55290HepG2NOL12
GLCCI1ENSG00000106415.8115.8605059.880900.952102.339501.34210HepG2NONO
GLCCI1ENSG00000106415.853.2774088.36470-0.729901.943801.42060HepG2PCBP1
GLCCI1ENSG00000106415.880.93670131.74980-0.702902.973502.36380HepG2PUM1
GLCCI1ENSG00000106415.8205.0350097.373701.074206.376405.48360HepG2QKI
GLCCI1ENSG00000106415.8148.3394088.377300.747102.899002.21140HepG2RBM25
GLCCI1ENSG00000106415.8168.37690100.067600.750603.124802.55650HepG2NELFE
GLCCI1ENSG00000106415.849.73990103.57520-1.058203.521702.76640HepG2RPLP0
GLCCI1ENSG00000106415.899.1664054.097900.874202.552301.95980HepG2RPS19
GLCCI1ENSG00000106415.8260.88290148.154000.816205.655405.00980HepG2SRFBP1
GLCCI1ENSG00000106415.8238.4082097.710801.286709.778309.01220HepG2SRSF1
GLCCI1ENSG00000106415.8300.70920133.308701.173502.847501.83000HepG2SRSF3
GLCCI1ENSG00000106415.870.47190122.54020-0.798103.052202.39820HepG2SRSF5
GLCCI1ENSG00000106415.852.0839094.46160-0.858902.762602.06710HepG2SRSF7
GLCCI1ENSG00000106415.8170.5882087.837400.957504.892304.17990HepG2TAF15
GLCCI1ENSG00000106415.828.3089074.36880-1.393404.668403.97450HepG2TRIM56
GLCCI1ENSG00000106415.8201.7720079.787501.338407.820206.76790HepG2U2AF1
GLCCI1ENSG00000106415.8310.9606089.636801.794506.207604.66440HepG2U2AF2
GLCCI1ENSG00000106415.861.70340107.40700-0.799702.501201.92620HepG2UTP3
GLCCI1ENSG00000106415.864.93840122.35320-0.913903.903003.28340HepG2ZNF622
GLCCI1ENSG00000106415.8205.05710287.67210-0.488402.958701.39920K562AKAP1
GLCCI1ENSG00000106415.8556.63220420.776800.403603.210802.51700K562DDX47
GLCCI1ENSG00000106415.8154.81110262.39440-0.761204.154402.10110K562DDX51
GLCCI1ENSG00000106415.8403.39040260.181100.632603.576002.38380K562EIF3D
GLCCI1ENSG00000106415.8705.23780540.555600.383603.529102.47000K562EIF4G2
GLCCI1ENSG00000106415.8122.87340228.53700-0.895302.293001.44920K562HNRNPM
GLCCI1ENSG00000106415.8324.87550427.96770-0.397602.341301.49900K562MATR3
GLCCI1ENSG00000106415.8296.48210419.05980-0.499203.380501.88530K562PCBP1
GLCCI1ENSG00000106415.8252.16790381.56900-0.597603.610802.49650K562PCBP2
GLCCI1ENSG00000106415.8237.37610416.59680-0.811507.632906.56640K562PTBP1
GLCCI1ENSG00000106415.8234.67080371.54830-0.662903.941103.30930K562PUS1
GLCCI1ENSG00000106415.8252.42920399.57900-0.662604.815203.66980K562RBM22
GLCCI1ENSG00000106415.8189.32730296.29010-0.646104.155903.10290K562SF3B4
GLCCI1ENSG00000106415.8252.97230408.38070-0.690905.235904.26770K562SRSF1
GLCCI1ENSG00000106415.8289.83560413.35760-0.512202.873102.15340K562TARDBP
GLCCI1ENSG00000106415.8291.19160199.955400.542202.521301.63230K562TIAL1
GLCCI1ENSG00000106415.8184.66910276.24350-0.581002.627301.56470K562U2AF1
GLCCI1ENSG00000106415.8173.54420285.21970-0.716804.638403.60440K562U2AF2
GLCCI1ENSG00000106415.8165.27050242.31260-0.552002.285901.36910K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GLCCI1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of GLCCI1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GLCCI1 is not avaliable on ENCORE database.