GDAP2

General Information

Gene Name       : GDAP2
Gene ID             : ENSG00000196505.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GDAP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GDAP2ENSG00000196505.108.205.887.04ENCSR000AEF
HepG2GDAP2ENSG00000196505.105.949.287.61ENCSR985KAT
K562GDAP2ENSG00000196505.108.478.868.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GDAP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GDAP2 RNA is bound by 5 proteins.  







eCLIP assay for GDAP2 is not avaliable on ENCORE database.





5 proteins are bound to GDAP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1118420172118420266-3'-UTR,intron-Distal4.781006.34785K562KHSRP
chr1118420406118420479-3'-UTR,intron-Distal,intron-Proximal3.660114.21358HepG2U2AF2
chr1118413201118413262-CDS,intron-Distal3.085674.02686HepG2U2AF2
chr1118454673118454720-CDS,intron-Distal,intron-Proximal3.025383.76090HepG2U2AF2
chr1118420608118420665-CDS,intron-Distal,intron-Proximal3.844364.76554HepG2BCLAF1
chr1118439563118439612-CDS,intron-Distal,intron-Proximal3.043453.91443HepG2PPIG
chr1118441678118441764-CDS,intron-Distal,intron-Proximal3.008884.16939HepG2PPIG
chr1118471772118471901-intron-Distal3.949053.18939HepG2RBFOX2
chr1118417890118417982-intron-Distal3.900576.81262HepG2RBFOX2
chr1118417982118418045-intron-Distal4.689186.07369HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GDAP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GDAP2 is not available on ENCORE database.

  • 35 RBPs can affect the levels of GDAP2.  








The Knockdown/knockout RNA-Seq assay for GDAP2 is not available on ENCORE database.





35 RBPs can affect the gene expression of GDAP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GDAP2ENSG00000196505.6243.46470397.89620-0.708706.892306.01950HepG2ACO1
GDAP2ENSG00000196505.6656.94450489.776400.423502.170601.69300HepG2AKAP1
GDAP2ENSG00000196505.6275.24280405.26870-0.558203.042102.21950HepG2ASCC1
GDAP2ENSG00000196505.6327.85940439.23670-0.421902.259001.71280HepG2BOP1
GDAP2ENSG00000196505.6522.72080385.026800.441002.462301.72860HepG2CIRBP
GDAP2ENSG00000196505.6319.76360405.32680-0.342102.194701.61220HepG2CELF1
GDAP2ENSG00000196505.6235.07090387.47670-0.721004.432803.69180HepG2EIF2S1
GDAP2ENSG00000196505.6472.16440599.55880-0.344602.357301.79430HepG2ETF1
GDAP2ENSG00000196505.6288.60310388.84580-0.430102.171201.43210HepG2EWSR1
GDAP2ENSG00000196505.6201.12270370.44720-0.881205.331903.81470HepG2FUS
GDAP2ENSG00000196505.6250.27800405.63690-0.696704.477803.60700HepG2HNRNPK
GDAP2ENSG00000196505.6279.88050397.13460-0.504804.192503.37550HepG2HNRNPL
GDAP2ENSG00000196505.6565.23490407.401200.472302.833602.15200HepG2IGF2BP2
GDAP2ENSG00000196505.6617.53010444.793300.473302.807902.17040HepG2NCBP2
GDAP2ENSG00000196505.6293.83740412.60490-0.489703.172302.54030HepG2PUF60
GDAP2ENSG00000196505.6569.60400421.530000.434203.164602.50360HepG2QKI
GDAP2ENSG00000196505.6815.91420501.124900.703109.457008.62870HepG2RBM22
GDAP2ENSG00000196505.6493.98380382.575100.368602.145901.54660HepG2RBM25
GDAP2ENSG00000196505.6403.57420285.048800.501502.319901.35180HepG2RCC2
GDAP2ENSG00000196505.6820.27050468.182100.808909.316308.18180HepG2RPLP0
GDAP2ENSG00000196505.6769.63540422.977500.8635013.5261012.65000HepG2SRSF1
GDAP2ENSG00000196505.6572.53900463.299700.305301.915101.37980HepG2SUCLG1
GDAP2ENSG00000196505.6246.92080347.98690-0.495003.366202.75770HepG2TRIM56
GDAP2ENSG00000196505.6603.41510352.324700.776106.670905.70820HepG2U2AF1
GDAP2ENSG00000196505.6509.40510402.356700.340202.332701.77230HepG2UTP3
GDAP2ENSG00000196505.6467.76540345.473700.437103.493002.75230HepG2ZC3H8
GDAP2ENSG00000196505.61428.43430693.649901.0421016.8680015.58020K562AQR
GDAP2ENSG00000196505.6373.19150505.06860-0.436603.455202.08880K562EIF2S1
GDAP2ENSG00000196505.6478.64930342.231900.483902.614601.61180K562EIF3D
GDAP2ENSG00000196505.6331.35050432.61910-0.384702.409701.35360K562EIF4B
GDAP2ENSG00000196505.6669.67130498.487300.425802.171201.55540K562G3BP2
GDAP2ENSG00000196505.6460.80080584.22620-0.342401.975601.33070K562GRSF1
GDAP2ENSG00000196505.6353.44720473.27070-0.421203.099102.24570K562MTPAP
GDAP2ENSG00000196505.6514.20040310.927600.725705.781004.69420K562PRPF8
GDAP2ENSG00000196505.6427.61420316.803100.432602.165301.44680K562RPS19
GDAP2ENSG00000196505.6332.05160456.37750-0.458802.673901.64460K562SRSF4
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GDAP2 is not available on ENCORE database.





8 RBPs can affect the splicing of GDAP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGDAP2ENSG00000196505.6chr1-1184203971184204631184128051184132381184206301184207740.387000.001350.03417includedHepG2HNRNPK
SEGDAP2ENSG00000196505.6chr1-1184203671184204631184061061184132381184206301184207370.180000.000020.00525includedHepG2DDX59
SEGDAP2ENSG00000196505.6chr1-1184203971184204631184128051184132381184206301184207370.412000.000000.00000includedHepG2U2AF2
SEGDAP2ENSG00000196505.6chr1-118429198118429275118426109118426249118430319118430396-0.112000.008030.06818excludedK562AQR
SEGDAP2ENSG00000196505.6chr1-1184203971184204631184128051184132381184206301184207370.212000.000000.00001includedK562DROSHA
SEGDAP2ENSG00000196505.6chr1-118420397118420463118412805118413238118420630118420737-0.166000.000010.00232excludedHepG2LARP4
SEGDAP2ENSG00000196505.6chr1-1184203971184204631184128051184132381184206301184207370.096000.000880.05930includedK562HNRNPUL1
SEGDAP2ENSG00000196505.6chr1-1184203671184204631184061061184132381184206301184207370.129000.000030.00803includedHepG2RBFOX2
A3SSGDAP2ENSG00000196505.6chr1-1184394541184396771184394541184396111184416781184418230.116000.000000.00003longerK562AQR
A3SSGDAP2ENSG00000196505.6chr1-1184416781184418611184416781184418381184491271184492470.077000.002010.01296longerK562AQR
A3SSGDAP2ENSG00000196505.6chr1-1184612181184614461184612181184613581184628041184630470.051000.012320.06320longerK562AQR
A3SSGDAP2ENSG00000196505.6chr1-1184546151184547341184546151184547041184551511184553050.170000.000020.00021longerK562AQR
MXEGDAP2ENSG00000196505.6chr1-1184303191184303961184394541184396281184291981184292751184416781184418380.179000.005310.037811includedK562AQR
MXEGDAP2ENSG00000196505.6chr1-1184291981184292751184303191184304321184261091184262491184394541184396110.113000.005260.037521includedK562AQR
MXEGDAP2ENSG00000196505.6chr1-1184291981184292751184303191184303961184261091184262491184394541184396110.194000.003510.026731includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GDAP2 is not avaliable on ENCORE database.