DENND3

General Information

Gene Name       : DENND3
Gene ID             : ENSG00000105339.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DENND3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DENND3ENSG00000105339.1027.5933.7830.69ENCSR000AEF
HepG2DENND3ENSG00000105339.103.451.492.47ENCSR985KAT
K562DENND3ENSG00000105339.100.440.070.26ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DENND3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DENND3 RNA is bound by 3 proteins.  







eCLIP assay for DENND3 is not avaliable on ENCORE database.





3 proteins are bound to DENND3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8142139117142139144+intron-Distal5.824967.35776K562WDR43
chr8142139112142139142+intron-Distal5.322385.56432HepG2UTP18
chr8142187156142187236+intron-Distal3.786304.14792HepG2XPO5
chr8142139100142139145+intron-Distal5.484296.21871K562UTP18
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DENND3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DENND3 is not available on ENCORE database.

  • 44 RBPs can affect the levels of DENND3.  








The Knockdown/knockout RNA-Seq assay for DENND3 is not available on ENCORE database.





44 RBPs can affect the gene expression of DENND3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DENND3ENSG00000105339.6114.13420189.94420-0.734802.737601.79910HepG2ABCF1
DENND3ENSG00000105339.6358.71130199.474800.846505.410103.97440HepG2AKAP8
DENND3ENSG00000105339.6467.17410233.491001.0005013.0256011.73170HepG2AUH
DENND3ENSG00000105339.670.98280118.75820-0.742502.237101.69350HepG2BOP1
DENND3ENSG00000105339.670.37990150.47200-1.096304.640003.65270HepG2CIRBP
DENND3ENSG00000105339.6359.84930210.123000.776102.523301.79420HepG2CNOT7
DENND3ENSG00000105339.6252.86650166.188700.605503.388202.69180HepG2CELF1
DENND3ENSG00000105339.6272.98340119.280301.194406.750105.60540HepG2DDX55
DENND3ENSG00000105339.6234.33110106.678901.135208.774307.57550HepG2DNAJC21
DENND3ENSG00000105339.6314.56430151.405901.054807.196906.27370HepG2EIF2S1
DENND3ENSG00000105339.6508.00610268.064900.9222011.8329010.73090HepG2ETF1
DENND3ENSG00000105339.6178.87110120.757300.566702.051901.36680HepG2FUBP3
DENND3ENSG00000105339.6356.72840156.612501.187509.719008.51010HepG2G3BP1
DENND3ENSG00000105339.6245.28570160.133400.615102.318201.41270HepG2KHSRP
DENND3ENSG00000105339.6106.65360168.93020-0.663502.386801.77600HepG2MAGOH
DENND3ENSG00000105339.6100.08590169.86330-0.763102.723002.09630HepG2MATR3
DENND3ENSG00000105339.6125.01310177.20670-0.503402.006001.35370HepG2NOL12
DENND3ENSG00000105339.6321.36250154.782501.053907.643406.45990HepG2PABPC4
DENND3ENSG00000105339.696.43640163.35410-0.760403.024302.39400HepG2PCBP1
DENND3ENSG00000105339.6196.51350134.633100.545502.446901.71460HepG2PRPF4
DENND3ENSG00000105339.6362.79990179.432501.015609.170507.98480HepG2PUM2
DENND3ENSG00000105339.6468.62850180.005201.3803018.3028016.89300HepG2QKI
DENND3ENSG00000105339.641.39930131.36240-1.665906.009204.99670HepG2RAVER1
DENND3ENSG00000105339.6378.97640224.055600.758206.471105.75880HepG2RBM22
DENND3ENSG00000105339.6154.66800105.978700.545302.095701.52240HepG2SAFB2
DENND3ENSG00000105339.6111.72920228.31540-1.031005.429804.46590HepG2SF3A3
DENND3ENSG00000105339.670.51860116.76260-0.727502.070501.45400HepG2SF3B1
DENND3ENSG00000105339.6602.34560253.067701.2510021.9228020.86310HepG2SRFBP1
DENND3ENSG00000105339.6216.72030146.961800.560302.952702.38650HepG2SRSF9
DENND3ENSG00000105339.6251.72430189.941500.406201.849501.32240HepG2SUCLG1
DENND3ENSG00000105339.6423.06690118.737601.8330017.4018015.95830HepG2SUPV3L1
DENND3ENSG00000105339.6340.40820162.385601.067708.058207.18160HepG2TAF15
DENND3ENSG00000105339.6235.36840149.181700.657803.685102.72670HepG2TIA1
DENND3ENSG00000105339.6263.75960115.644101.189409.677508.84150HepG2TIAL1
DENND3ENSG00000105339.6268.32680165.249100.699203.833302.78740HepG2TUFM
DENND3ENSG00000105339.6111.01640164.04600-0.563301.894101.36330HepG2U2AF1
DENND3ENSG00000105339.6140.30970195.48710-0.478501.906001.38940HepG2UTP3
DENND3ENSG00000105339.6164.84520222.69010-0.433902.043501.55470HepG2ZNF622
DENND3ENSG00000105339.6104.3500045.620001.193604.242903.43040K562AKAP8L
DENND3ENSG00000105339.611.3229036.70020-1.696503.024902.39570K562FXR1
DENND3ENSG00000105339.660.8342020.480301.570503.765703.08190K562HNRNPC
DENND3ENSG00000105339.646.8020018.363701.349602.527201.66940K562PSIP1
DENND3ENSG00000105339.699.1871032.295901.618705.839103.75610K562SUCLG1
DENND3ENSG00000105339.64.9761031.24530-2.650504.462203.41290K562SYNCRIP
DENND3ENSG00000105339.643.4016014.690801.562702.955701.51500K562TRIP6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DENND3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of DENND3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for DENND3 is not avaliable on ENCORE database.