CKMT2-AS1

General Information

Gene Name       : CKMT2-AS1
Gene ID             : ENSG00000247572.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CKMT2-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CKMT2-AS1ENSG00000247572.73.363.523.44ENCSR000AEF
HepG2CKMT2-AS1ENSG00000247572.73.855.014.43ENCSR985KAT
K562CKMT2-AS1ENSG00000247572.79.518.348.93ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CKMT2-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CKMT2-AS1 RNA is bound by 7 proteins.  







eCLIP assay for CKMT2-AS1 is not avaliable on ENCORE database.





7 proteins are bound to CKMT2-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58058565080585703-intron-Distal3.132613.18845HepG2HNRNPM
chr58058614180586192-intron-Distal3.960466.41110K562EXOSC5
chr58058970080589762-intron-Distal4.249733.59917K562EXOSC5
chr58057038080570484-intron-Distal3.352753.72876HepG2MATR3
chr58058611280586191-intron-Distal3.828786.48659HepG2SUGP2
chr58057010180570186-intron-Distal3.885023.63454HepG2SUGP2
chr58055296480553071-intron-Distal3.094003.92900HepG2HNRNPL
chr58058660080586640-intron-Distal4.208503.59909K562EXOSC5
chr58058712880587183-intron-Distal4.655044.80399K562EXOSC5
chr58058956880589608-intron-Distal3.167983.43829K562EXOSC5
chr58057150980571556-intron-Distal3.079153.11000HepG2HNRNPM
chr58055543380555537-intron-Distal4.045983.39864HepG2SUGP2
chr58058911780589153-intron-Distal3.068453.14999K562EXOSC5
chr58058785280587936-intron-Distal4.074273.79098HepG2SUGP2
chr58057222280572260-intron-Distal4.053573.01445K562EXOSC5
chr58058645480586523-intron-Distal4.174443.62238HepG2MATR3
chr58057202380572092-intron-Distal4.360933.59917K562EXOSC5
chr58057150980571563-intron-Distal5.191649.02435K562EXOSC5
chr58056639980566494-intron-Distal4.915525.15027HepG2MATR3
chr58058940580589498-intron-Distal4.951866.73640K562EXOSC5
chr58057289680572976-intron-Distal4.403793.01445K562EXOSC5
chr58058653480586571-intron-Distal3.903793.01456K562EXOSC5
chr58057150980571565-intron-Distal3.994043.29248HepG2SUGP2
chr58057037480570464-intron-Distal5.8868328.35432K562EXOSC5
chr58056975380569783-intron-Distal4.068453.59909K562EXOSC5
chr58056916480569208-intron-Distal5.030677.06230K562EXOSC5
chr58054639180546468-intron-Distal,intron-Proximal4.171253.53509HepG2HLTF
chr58057010380570204-intron-Distal4.139243.51329HepG2MATR3
chr58056951880569584-intron-Distal4.553574.48560K562EXOSC5
chr58057037580570478-intron-Distal3.994043.29248HepG2SUGP2
chr58055567880555772-intron-Distal4.348554.80399K562EXOSC5
chr58056232680562424-intron-Distal3.749324.58716HepG2QKI
chr58057038080570497-intron-Distal6.132326.36753HepG2EXOSC5
chr58058936580589459-intron-Distal4.792966.52794HepG2MATR3
chr58058992080589957-intron-Distal4.118213.59917K562EXOSC5
chr58057013180570189-intron-Distal3.708504.02190K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CKMT2-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CKMT2-AS1 is not available on ENCORE database.

  • 31 RBPs can affect the levels of CKMT2-AS1.  








The Knockdown/knockout RNA-Seq assay for CKMT2-AS1 is not available on ENCORE database.





31 RBPs can affect the gene expression of CKMT2-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CKMT2-AS1ENSG00000247572.3209.94920132.387000.665202.593601.68120HepG2ABCF1
CKMT2-AS1ENSG00000247572.358.05680105.30620-0.859102.567601.98820HepG2BOP1
CKMT2-AS1ENSG00000247572.3222.40580117.987500.914504.683303.69210HepG2CIRBP
CKMT2-AS1ENSG00000247572.3176.4138096.316900.873002.812402.13020HepG2DDX21
CKMT2-AS1ENSG00000247572.3190.44110102.588900.892404.813703.96470HepG2DKC1
CKMT2-AS1ENSG00000247572.361.0061099.88950-0.711402.110101.48770HepG2DNAJC21
CKMT2-AS1ENSG00000247572.3224.66240131.192900.776003.654002.92150HepG2EIF4A3
CKMT2-AS1ENSG00000247572.3278.61800185.077800.590103.415802.75780HepG2ETF1
CKMT2-AS1ENSG00000247572.3210.35130100.846701.060505.781104.89350HepG2HNRNPA1
CKMT2-AS1ENSG00000247572.3169.63250111.438400.606102.635602.04370HepG2HNRNPU
CKMT2-AS1ENSG00000247572.385.95810148.17240-0.785602.043401.51930HepG2PUF60
CKMT2-AS1ENSG00000247572.383.88120157.18200-0.906003.770702.99260HepG2PUM2
CKMT2-AS1ENSG00000247572.386.93100154.69040-0.831403.424102.86510HepG2RBM22
CKMT2-AS1ENSG00000247572.365.35460134.33000-1.039404.125403.57640HepG2SRSF1
CKMT2-AS1ENSG00000247572.380.96120146.31550-0.853803.488902.80090HepG2SRSF5
CKMT2-AS1ENSG00000247572.3246.85360151.694100.702404.450203.83140HepG2SSB
CKMT2-AS1ENSG00000247572.367.86270109.25300-0.687002.284901.76270HepG2TRIM56
CKMT2-AS1ENSG00000247572.3165.0852091.716000.847903.194502.41770HepG2XRN2
CKMT2-AS1ENSG00000247572.365.43170148.54350-1.182806.817106.05810HepG2ZNF622
CKMT2-AS1ENSG00000247572.3117.38020325.89730-1.473204.467303.77670K562AGGF1
CKMT2-AS1ENSG00000247572.3124.17340339.09220-1.449305.787204.82130K562AKAP8L
CKMT2-AS1ENSG00000247572.3196.20620355.75390-0.858502.933401.99450K562ATP5C1
CKMT2-AS1ENSG00000247572.3131.68950343.06470-1.381302.712101.51010K562HNRNPA2B1
CKMT2-AS1ENSG00000247572.3152.59130359.92720-1.238003.435102.50390K562KIF1C
CKMT2-AS1ENSG00000247572.3143.82600282.60840-0.974502.607001.75560K562NAA15
CKMT2-AS1ENSG00000247572.389.19970300.33100-1.751403.612602.43850K562PABPN1
CKMT2-AS1ENSG00000247572.3274.02840187.774600.545202.307101.54820K562PCBP3
CKMT2-AS1ENSG00000247572.3235.48790144.036100.709103.908302.95010K562POLR2G
CKMT2-AS1ENSG00000247572.369.45090130.83490-0.913703.023602.23940K562PRPF8
CKMT2-AS1ENSG00000247572.359.51310336.42040-2.4990010.417509.41030K562PUS1
CKMT2-AS1ENSG00000247572.3109.79740327.67990-1.577405.588604.77140K562RBM15
CKMT2-AS1ENSG00000247572.389.99300140.43970-0.642102.338901.57080K562RBM22
CKMT2-AS1ENSG00000247572.365.32160143.60910-1.136505.304304.33150K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CKMT2-AS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CKMT2-AS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CKMT2-AS1 is not avaliable on ENCORE database.