PCNT

General Information

Gene Name : PCNT
Gene ID : ENSG00000160299.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PCNT)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PCNT	ENSG00000160299.16	4.67	12.86	8.77	ENCSR000AEF
HepG2	PCNT	ENSG00000160299.16	13.29	13.55	13.42	ENCSR985KAT
K562	PCNT	ENSG00000160299.16	23.20	23.23	23.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PCNT is not avaliable on ENCORE database.

Proteins bound to RNA

PCNT RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for PCNT is not avaliable on ENCORE database.

40 proteins are bound to PCNT RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	47792097	47792115	+	intron-Distal	4.97169	400.00000	HepG2	AQR
chr21	47792065	47792103	+	intron-Distal	7.04137	400.00000	HepG2	AGGF1
chr21	47792103	47792115	+	intron-Distal	6.98389	400.00000	HepG2	AGGF1
chr21	47792068	47792097	+	intron-Distal	4.97169	400.00000	HepG2	AQR
chr21	47863899	47863904	+	intron-Distal,intron-Proximal	7.25255	84.25404	K562	AQR
chr21	47863864	47863899	+	intron-Distal,intron-Proximal	7.28462	84.25404	K562	AQR
chr21	47863860	47863864	+	CDS,intron-Distal,intron-Proximal	7.50107	67.66403	K562	AQR
chr21	47792121	47792275	+	intron-Distal	5.96261	63.08044	K562	AGGF1
chr21	47792065	47792115	+	intron-Distal	7.63056	58.27694	HepG2	XPO5
chr21	47862492	47862530	+	intron-Proximal	8.09878	57.16196	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 251 entries

eCLIP assay for PCNT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PCNT is not available on ENCORE database.
97 RBPs can affect the levels of PCNT.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PCNT is not available on ENCORE database.

97 RBPs can affect the gene expression of PCNT :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PCNT	ENSG00000160299.12	490.75540	963.85900	-0.97380	23.87020	22.35130	HepG2	CKAP4
PCNT	ENSG00000160299.12	656.48170	1167.32040	-0.83040	21.57720	20.40580	HepG2	ZNF622
PCNT	ENSG00000160299.12	596.62730	1024.72500	-0.78030	14.52570	13.31440	HepG2	UTP3
PCNT	ENSG00000160299.12	841.95270	478.07680	0.81640	13.01630	12.00170	HepG2	NELFE
PCNT	ENSG00000160299.12	881.25790	434.85820	1.01890	12.03470	10.70110	HepG2	MAGOH
PCNT	ENSG00000160299.12	869.09690	434.70580	0.99940	11.81000	10.48130	HepG2	FXR1
PCNT	ENSG00000160299.12	674.48320	1141.74620	-0.75940	11.75390	10.17290	HepG2	RBM15
PCNT	ENSG00000160299.12	4016.73880	2918.89860	0.46050	10.81870	9.62720	K562	DDX47
PCNT	ENSG00000160299.12	781.15210	408.43480	0.93540	10.70810	9.41580	HepG2	HNRNPK
PCNT	ENSG00000160299.12	732.81090	445.31530	0.71850	9.97580	8.91800	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 106 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PCNT is not available on ENCORE database.

11 RBPs can affect the splicing of PCNT :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PCNT	ENSG00000160299.12	chr21	+	47778287	47778381	47776888	47777106	47783394	47783849	0.06300	0.00000	0.00012	included	HepG2	U2AF2
SE	PCNT	ENSG00000160299.12	chr21	+	47864606	47864734	47860767	47860997	47865196	47865682	-0.09100	0.00000	0.00010	excluded	K562	AQR
SE	PCNT	ENSG00000160299.12	chr21	+	47771342	47771454	47769597	47769734	47773017	47773240	-0.28400	0.00000	0.00000	excluded	K562	PUS1
SE	PCNT	ENSG00000160299.12	chr21	+	47771342	47771454	47769597	47769734	47773017	47773240	-0.23500	0.00000	0.00010	excluded	K562	RBM15
SE	PCNT	ENSG00000160299.12	chr21	+	47771342	47771454	47769597	47769734	47773017	47773240	-0.23200	0.00000	0.00028	excluded	K562	AGGF1
A5SS	PCNT	ENSG00000160299.12	chr21	+	47851442	47852129	47851442	47851892	47855816	47856061	-0.51900	0.00000	0.00018	shorter	K562	SRSF1
A5SS	PCNT	ENSG00000160299.12	chr21	+	47851442	47852129	47851442	47851892	47855816	47856061	-0.80500	0.00001	0.00097	shorter	HepG2	SRSF1
SE	PCNT	ENSG00000160299.12	chr21	+	47771342	47771454	47769597	47769734	47773017	47773240	-0.19100	0.00002	0.00125	excluded	K562	AKAP8L
SE	PCNT	ENSG00000160299.12	chr21	+	47771342	47771454	47769597	47769734	47773017	47773240	-0.21300	0.00002	0.00125	excluded	K562	UTP18
SE	PCNT	ENSG00000160299.12	chr21	+	47845744	47845885	47841883	47842038	47847535	47847709	-0.20300	0.00003	0.00075	excluded	K562	PUS1

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PCNT

General Information

Functions

Localization

Domains (AlphaFold: PCNT)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PCNT is not avaliable on ENCORE database.

40 proteins are bound to PCNT RNA:

eCLIP assay for PCNT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PCNT is not available on ENCORE database.

97 RBPs can affect the gene expression of PCNT :

The Knockdown/knockout RNA-Seq assay for PCNT is not available on ENCORE database.

11 RBPs can affect the splicing of PCNT :

The Knockdown/knockout RNA-Seq assay for PCNT is not avaliable on ENCORE database.