PANK3

General Information

Gene Name : PANK3
Gene ID : ENSG00000120137.6
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PANK3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PANK3	ENSG00000120137.6	23.97	19.50	21.73	ENCSR000AEF
HepG2	PANK3	ENSG00000120137.6	9.52	22.66	16.09	ENCSR985KAT
K562	PANK3	ENSG00000120137.6	16.88	19.99	18.43	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PANK3 is not avaliable on ENCORE database.

Proteins bound to RNA

PANK3 RNA is bound by 28 proteins.

CanvasJS.com

eCLIP assay for PANK3 is not avaliable on ENCORE database.

28 proteins are bound to PANK3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	167987923	167987956	-	intron-Distal	10.47839	282.39400	K562	DGCR8
chr5	167987924	167987950	-	intron-Distal	9.99103	214.22417	HepG2	DGCR8
chr5	167987917	167987923	-	intron-Distal	10.05039	177.42966	K562	DGCR8
chr5	167987907	167987917	-	intron-Distal	9.23629	144.88451	K562	DGCR8
chr5	167987950	167987961	-	intron-Distal	9.10857	122.23919	HepG2	DGCR8
chr5	167987956	167987964	-	intron-Distal	9.50806	100.97686	K562	DGCR8
chr5	167987906	167987923	-	intron-Distal	8.92770	91.76748	HepG2	DGCR8
chr5	167993161	167993269	-	CDS,intron-Distal,intron-Proximal	6.59207	58.38791	K562	PUM2
chr5	167988011	167988063	-	intron-Distal	5.44561	52.39533	K562	DROSHA
chr5	167987967	167988011	-	intron-Distal	8.10274	38.09689	K562	DROSHA
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 102 entries

eCLIP assay for PANK3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PANK3 is not available on ENCORE database.
142 RBPs can affect the levels of PANK3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PANK3 is not available on ENCORE database.

142 RBPs can affect the gene expression of PANK3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PANK3	ENSG00000120137.6	2816.45690	5464.75850	-0.95630	62.08940	59.92430	HepG2	CKAP4
PANK3	ENSG00000120137.6	3302.12710	6774.40520	-1.03670	58.94810	56.90970	HepG2	SF3B4
PANK3	ENSG00000120137.6	2992.44370	5465.60230	-0.86910	45.73480	44.01400	HepG2	ACO1
PANK3	ENSG00000120137.6	3942.57640	7241.37680	-0.87710	42.92050	41.36300	HepG2	NELFE
PANK3	ENSG00000120137.6	4047.25330	6542.17680	-0.69280	39.39190	37.95120	HepG2	ZNF622
PANK3	ENSG00000120137.6	1840.35650	3567.14530	-0.95480	39.59040	37.15440	HepG2	PARN
PANK3	ENSG00000120137.6	2084.74360	3603.69890	-0.78960	30.09510	28.27880	HepG2	HNRNPU
PANK3	ENSG00000120137.6	2398.29450	5237.97060	-1.12700	28.36510	26.13150	K562	HSPD1
PANK3	ENSG00000120137.6	3354.91090	5364.52370	-0.67720	26.40560	24.47640	K562	UPF1
PANK3	ENSG00000120137.6	4282.18500	6744.28560	-0.65530	25.43900	23.90320	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 171 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PANK3 is not available on ENCORE database.

4 RBPs can affect the splicing of PANK3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PANK3	ENSG00000120137.6	chr5	-	167990893	167991070			167988397	167988521	167993017	167993271	-0.13500	0.00000	0.00000	excluded	K562	SF3B4
MXE	PANK3	ENSG00000120137.6	chr5	-	167986036	167986162	167988397	167988521	167984615	167984626	167993017	167993069	0.12100	0.00000	0.00000	1included	K562	SF3B4
SE	PANK3	ENSG00000120137.6	chr5	-	167990893	167991070			167988397	167988521	167993017	167993271	-0.07300	0.00015	0.00868	excluded	K562	TARDBP
SE	PANK3	ENSG00000120137.6	chr5	-	167990893	167991070			167986036	167986162	167993017	167993271	-0.06900	0.00053	0.01895	excluded	K562	AKAP8L
SE	PANK3	ENSG00000120137.6	chr5	-	167990893	167991070			167986036	167986162	167993017	167993271	-0.05500	0.00201	0.03021	excluded	K562	PUS1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PANK3

General Information

Functions

Localization

Domains (AlphaFold: PANK3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PANK3 is not avaliable on ENCORE database.

28 proteins are bound to PANK3 RNA:

eCLIP assay for PANK3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PANK3 is not available on ENCORE database.

142 RBPs can affect the gene expression of PANK3 :

The Knockdown/knockout RNA-Seq assay for PANK3 is not available on ENCORE database.

4 RBPs can affect the splicing of PANK3 :

The Knockdown/knockout RNA-Seq assay for PANK3 is not avaliable on ENCORE database.