GTPBP4

General Information

Gene Name : GTPBP4
Gene ID : ENSG00000107937.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GTPBP4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GTPBP4	ENSG00000107937.18	62.68	50.94	56.81	ENCSR000AEF
HepG2	GTPBP4	ENSG00000107937.18	48.96	67.76	58.36	ENCSR985KAT
K562	GTPBP4	ENSG00000107937.18	85.02	68.53	76.78	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GTPBP4 is not avaliable on ENCORE database.

Proteins bound to RNA

GTPBP4 RNA is bound by 44 proteins.

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eCLIP assay for GTPBP4 is not avaliable on ENCORE database.

44 proteins are bound to GTPBP4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	1063022	1063160	+	CDS	3.94789	35.53445	K562	UCHL5
chr10	1053102	1053112	+	intron-Proximal	7.04253	28.03700	K562	AQR
chr10	1054899	1054964	+	CDS	4.78550	26.25304	K562	UCHL5
chr10	1053066	1053071	+	CDS,intron-Proximal	6.00070	25.05606	K562	AQR
chr10	1061691	1061752	+	CDS,intron-Proximal	4.38654	23.49461	K562	UCHL5
chr10	1060193	1060252	+	CDS	3.62426	20.19789	K562	UCHL5
chr10	1058404	1058474	+	CDS,intron-Proximal	5.08438	20.17003	K562	ZNF622
chr10	1058430	1058483	+	CDS	3.73177	18.60706	K562	UCHL5
chr10	1046864	1046966	+	CDS,intron-Proximal	3.68275	18.13480	K562	EFTUD2
chr10	1055468	1055499	+	CDS,intron-Proximal	4.28605	17.43329	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 167 entries

eCLIP assay for GTPBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GTPBP4 is not available on ENCORE database.
104 RBPs can affect the levels of GTPBP4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GTPBP4 is not available on ENCORE database.

104 RBPs can affect the gene expression of GTPBP4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GTPBP4	ENSG00000107937.14	2817.81050	5207.39470	-0.88600	51.28390	48.34470	K562	SRPK2
GTPBP4	ENSG00000107937.14	3264.74540	5461.71500	-0.74240	31.76880	29.64670	K562	UPF1
GTPBP4	ENSG00000107937.14	3454.45640	5150.99880	-0.57640	29.99180	27.97110	K562	NSUN2
GTPBP4	ENSG00000107937.14	3564.92930	5605.18230	-0.65290	16.43630	14.89810	K562	EIF2S2
GTPBP4	ENSG00000107937.14	4557.84320	3030.32290	0.58880	15.75770	14.42300	K562	FXR1
GTPBP4	ENSG00000107937.14	2822.39500	1924.60600	0.55230	14.75070	13.84390	HepG2	SRSF1
GTPBP4	ENSG00000107937.14	4192.88250	6929.75550	-0.72490	13.05170	11.91150	K562	AQR
GTPBP4	ENSG00000107937.14	3368.69210	4636.00790	-0.46070	12.38630	10.81710	K562	MTPAP
GTPBP4	ENSG00000107937.14	3017.25140	4112.17680	-0.44670	11.31740	9.35330	K562	BCLAF1
GTPBP4	ENSG00000107937.14	4912.46670	3302.51180	0.57280	10.93900	9.34580	K562	EIF3G
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GTPBP4 is not available on ENCORE database.

18 RBPs can affect the splicing of GTPBP4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	GTPBP4	ENSG00000107937.14	chr10	+	1046616	1046808			1044942	1045035	1046887	1046953	-0.05900	0.00001	excluded	K562	SRSF1
SE	GTPBP4	ENSG00000107937.14	chr10	+	1046594	1046808			1044886	1045035	1046887	1046953	-0.08400	0.00000	excluded	K562	AQR
A5SS	GTPBP4	ENSG00000107937.14	chr10	+	1042045	1042288			1042045	1042182	1043147	1043248	0.11200	0.00000	longer	K562	AQR
A5SS	GTPBP4	ENSG00000107937.14	chr10	+	1042045	1042288			1042045	1042182	1043147	1043248	0.10200	0.00073	longer	HepG2	TAF15
RI	GTPBP4	ENSG00000107937.14	chr10	+	1042045	1043248			1042045	1042182	1043147	1043248	0.08400	0.00001	included	K562	PUS1
RI	GTPBP4	ENSG00000107937.14	chr10	+	1042045	1043248			1042045	1042182	1043147	1043248	0.12300	0.00003	included	HepG2	TAF15
RI	GTPBP4	ENSG00000107937.14	chr10	+	1042045	1043248			1042045	1042182	1043147	1043248	0.07300	0.00002	included	K562	AQR
MXE	GTPBP4	ENSG00000107937.14	chr10	+	1046887	1046953	1052957	1053068	1044942	1045035	1054897	1054975	0.05500	0.00000	1included	K562	AQR
MXE	GTPBP4	ENSG00000107937.14	chr10	+	1038428	1038599	1041868	1041972	1034337	1034467	1042045	1042182	0.14400	0.00000	1included	K562	TAF15
MXE	GTPBP4	ENSG00000107937.14	chr10	+	1038428	1038599	1041868	1041972	1034337	1034467	1042045	1042182	0.15000	0.00094	1included	K562	EWSR1

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GTPBP4

General Information

Functions

Localization

Domains (AlphaFold: GTPBP4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GTPBP4 is not avaliable on ENCORE database.

44 proteins are bound to GTPBP4 RNA:

eCLIP assay for GTPBP4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GTPBP4 is not available on ENCORE database.

104 RBPs can affect the gene expression of GTPBP4 :

The Knockdown/knockout RNA-Seq assay for GTPBP4 is not available on ENCORE database.

18 RBPs can affect the splicing of GTPBP4 :

The Knockdown/knockout RNA-Seq assay for GTPBP4 is not avaliable on ENCORE database.