BMS1

General Information

Gene Name : BMS1
Gene ID : ENSG00000165733.7
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BMS1)

Not Available

Antibody Validation

Bethyl Labs: A305-109A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BMS1	ENSG00000165733.7	21.13	19.54	20.34	ENCSR000AEF
HepG2	BMS1	ENSG00000165733.7	17.03	23.48	20.26	ENCSR985KAT
K562	BMS1	ENSG00000165733.7	25.11	27.41	26.26	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	BMS1-BGKcLV33-K562	ENCSR778XFE	BMS1	K562	Released		ENCSR271ZAB	CRISPR	KD% = 26.0,0.0

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
BMS1	ENCAB765MNY	A305-109A	1			Released, ENCODE4		BGKcLV33-3, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
BMS1	K562	CRISPR	ENCSR778XFE	ENCSR271ZAB	BMS1-BGKcLV33-3,BMS1-BGKcLV33-4	NT-BGKcLV33-1,NT-BGKcLV33-2	26.0,0.0	Released	ENCODE4
BMS1	HepG2	CRISPR			BGHcLV34-5,BGHcLV34-6	BGHcLV34-1,BGHcLV34-2	0.0,0.0	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
BMS1	Product_ID: A305-109A Lot_ID: 1 Source: Bethyl Labs Target Name: BMS1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BMS1 is not avaliable on ENCORE database.

Proteins bound to RNA

BMS1 RNA is bound by 26 proteins.

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eCLIP assay for BMS1 is not avaliable on ENCORE database.

26 proteins are bound to BMS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	43292292	43292373	+	CDS	6.30421	34.50933	K562	UCHL5
chr10	43293916	43293970	+	CDS	4.29121	29.32714	K562	UCHL5
chr10	43293970	43294001	+	CDS	4.97369	27.16463	K562	UCHL5
chr10	43292169	43292248	+	CDS	3.41555	27.08840	K562	PUM1
chr10	43292248	43292383	+	CDS	4.03583	26.34736	K562	PUM1
chr10	43310317	43310370	+	intron-Distal	5.50086	24.35646	K562	HNRNPM
chr10	43292189	43292235	+	CDS	5.57449	21.77268	K562	UCHL5
chr10	43292235	43292265	+	CDS	5.44825	21.65749	K562	UCHL5
chr10	43292286	43292352	+	CDS	5.20045	20.51236	K562	ZNF622
chr10	43292872	43292930	+	CDS	4.90228	20.00439	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 139 entries

eCLIP assay for BMS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BMS1 is not available on ENCORE database.
87 RBPs can affect the levels of BMS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BMS1 is not available on ENCORE database.

87 RBPs can affect the gene expression of BMS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BMS1	ENSG00000165733.7	1118.64620	2063.49850	-0.88330	28.35360	26.74290	HepG2	UTP3
BMS1	ENSG00000165733.7	1154.04340	2428.13630	-1.07320	25.16540	23.61020	HepG2	PUF60
BMS1	ENSG00000165733.7	784.52800	1714.66940	-1.12800	22.95130	21.16870	HepG2	HNRNPC
BMS1	ENSG00000165733.7	1351.37060	2314.33340	-0.77620	22.75600	21.12310	HepG2	SRSF7
BMS1	ENSG00000165733.7	3219.44420	2049.57830	0.65140	20.63160	19.59290	HepG2	SRSF1
BMS1	ENSG00000165733.7	2571.56840	4172.12680	-0.69810	20.46460	18.77380	K562	EIF2S2
BMS1	ENSG00000165733.7	1356.04600	2800.18870	-1.04610	20.87440	18.55740	K562	TARDBP
BMS1	ENSG00000165733.7	909.10370	2642.79760	-1.53950	19.73620	18.22280	K562	HNRNPC
BMS1	ENSG00000165733.7	1446.06330	2667.87680	-0.88360	16.74160	15.45060	HepG2	BOP1
BMS1	ENSG00000165733.7	3501.37920	2269.94560	0.62520	16.02030	14.67130	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BMS1 is not available on ENCORE database.

19 RBPs can affect the splicing of BMS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	BMS1	ENSG00000165733.7	chr10	+	43312046	43312120			43297584	43297666	43312765	43312942	-0.06400	0.00009	excluded	HepG2	U2AF1
SE	BMS1	ENSG00000165733.7	chr10	+	43312046	43312120			43297584	43297666	43312765	43312942	-0.18500	0.00000	excluded	K562	AQR
SE	BMS1	ENSG00000165733.7	chr10	+	43297584	43297666			43293915	43294073	43312046	43312120	-0.12500	0.00000	excluded	K562	PUS1
SE	BMS1	ENSG00000165733.7	chr10	+	43297584	43297666			43293915	43294073	43312046	43312120	-0.06900	0.00032	excluded	K562	RBM15
SE	BMS1	ENSG00000165733.7	chr10	+	43297584	43297666			43293915	43294073	43312046	43312120	-0.08900	0.00001	excluded	K562	AGGF1
A3SS	BMS1	ENSG00000165733.7	chr10	+	43289253	43289439			43289299	43289439	43288373	43288592	0.07300	0.00000	longer	K562	AQR
A3SS	BMS1	ENSG00000165733.7	chr10	+	43325689	43325870			43325708	43325870	43319056	43319232	0.07100	0.00000	longer	K562	AQR
A3SS	BMS1	ENSG00000165733.7	chr10	+	43319036	43319232			43319056	43319232	43318565	43318713	0.07400	0.00000	longer	K562	AQR
A5SS	BMS1	ENSG00000165733.7	chr10	+	43287940	43288182			43287940	43288062	43288404	43288592	0.08700	0.00000	longer	K562	AQR
MXE	BMS1	ENSG00000165733.7	chr10	+	43297435	43297666	43312046	43312120	43293915	43294073	43312765	43312942	0.07900	0.00013	1included	HepG2	U2AF1

Showing 1 to 10 of 45 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BMS1

General Information

Functions

Localization

Domains (AlphaFold: BMS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BMS1 is not avaliable on ENCORE database.

26 proteins are bound to BMS1 RNA:

eCLIP assay for BMS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BMS1 is not available on ENCORE database.

87 RBPs can affect the gene expression of BMS1 :

The Knockdown/knockout RNA-Seq assay for BMS1 is not available on ENCORE database.

19 RBPs can affect the splicing of BMS1 :

The Knockdown/knockout RNA-Seq assay for BMS1 is not avaliable on ENCORE database.