UPK3A

General Information

Gene Name       : UPK3A
Gene ID             : ENSG00000100373.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UPK3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UPK3AENSG00000100373.90.000.030.01ENCSR000AEF
HepG2UPK3AENSG00000100373.915.277.2411.25ENCSR985KAT
K562UPK3AENSG00000100373.90.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UPK3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • UPK3A RNA is bound by 2 proteins.  







eCLIP assay for UPK3A is not avaliable on ENCORE database.





2 proteins are bound to UPK3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224569163645691678+3'-UTR3.345743.01032HepG2LARP4
chr224568914445689195+CDS,intron-Proximal3.143543.28764HepG2LARP4
chr224568643445686547+intron-Distal6.419118.53168HepG2DKC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UPK3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UPK3A is not available on ENCORE database.

  • 90 RBPs can affect the levels of UPK3A.  








The Knockdown/knockout RNA-Seq assay for UPK3A is not available on ENCORE database.





90 RBPs can affect the gene expression of UPK3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UPK3AENSG00000100373.521.5659072.37980-1.746805.268603.82660HepG2AATF
UPK3AENSG00000100373.517.8025093.65660-2.3953012.0467010.96840HepG2ACO1
UPK3AENSG00000100373.524.0631074.58520-1.632105.192103.88990HepG2ADAR
UPK3AENSG00000100373.521.68230229.36190-3.4030029.0356027.53360HepG2AKAP1
UPK3AENSG00000100373.568.23160212.04950-1.6359012.5543011.27870HepG2AUH
UPK3AENSG00000100373.547.0702091.78290-0.963402.896101.93400HepG2BCCIP
UPK3AENSG00000100373.5272.4120079.729301.7725012.5416010.81690HepG2BCLAF1
UPK3AENSG00000100373.536.3878081.49980-1.163303.333202.49660HepG2CALR
UPK3AENSG00000100373.5482.86670180.300601.4211015.9423014.27430HepG2CIRBP
UPK3AENSG00000100373.518.5854045.93190-1.305302.249701.56480HepG2CNOT7
UPK3AENSG00000100373.5202.4608076.492401.4042010.031608.15780HepG2YBX3
UPK3AENSG00000100373.526.4354056.66090-1.099902.598301.55230HepG2CSTF2
UPK3AENSG00000100373.557.04920126.00750-1.143205.311604.47370HepG2CELF1
UPK3AENSG00000100373.571.94750135.51180-0.913404.353203.45710HepG2DAZAP1
UPK3AENSG00000100373.5152.7271086.605100.818304.358603.34120HepG2DDX19B
UPK3AENSG00000100373.5180.8112079.793501.180006.489405.49890HepG2DDX21
UPK3AENSG00000100373.5139.88930219.70670-0.651302.659602.04480HepG2DDX3X
UPK3AENSG00000100373.511.1149047.11450-2.083702.224401.35100HepG2DDX59
UPK3AENSG00000100373.5279.7985070.293701.9928020.4410018.07960HepG2DDX5
UPK3AENSG00000100373.5117.22940188.74360-0.687102.456601.87210HepG2DDX6
UPK3AENSG00000100373.5149.2674072.432901.043104.969503.67600HepG2DHX30
UPK3AENSG00000100373.5151.3643089.596200.756403.091702.38140HepG2DKC1
UPK3AENSG00000100373.5174.3784074.454201.227708.762607.67970HepG2DNAJC2
UPK3AENSG00000100373.5153.9950086.595200.830402.883701.94440HepG2EEF2
UPK3AENSG00000100373.517.8910070.29990-1.974305.864004.58180HepG2EIF3D
UPK3AENSG00000100373.5105.17940200.49950-0.930704.490103.67780HepG2EIF4A3
UPK3AENSG00000100373.577.09740195.22440-1.340406.378805.36520HepG2EIF4B
UPK3AENSG00000100373.5106.41070243.49070-1.194209.690408.67520HepG2ETF1
UPK3AENSG00000100373.536.5978091.49240-1.321904.817303.72090HepG2EWSR1
UPK3AENSG00000100373.517.05600114.76860-2.7504011.8193010.38710HepG2FIP1L1
UPK3AENSG00000100373.5219.10110126.761600.789403.605701.70510HepG2FMR1
UPK3AENSG00000100373.537.6625077.37810-1.038802.650501.55620HepG2FUS
UPK3AENSG00000100373.5139.59500202.31140-0.535301.924601.34360HepG2FXR1
UPK3AENSG00000100373.561.19830187.66520-1.6166010.237409.00010HepG2G3BP1
UPK3AENSG00000100373.5110.7578047.014501.236104.057603.29460HepG2GPKOW
UPK3AENSG00000100373.516.0569042.51260-1.404702.544301.47720HepG2GRSF1
UPK3AENSG00000100373.539.98010124.52820-1.639108.498007.02940HepG2HNRNPA2B1
UPK3AENSG00000100373.5104.6919039.783401.395805.567903.44270HepG2HNRNPD
UPK3AENSG00000100373.532.70530190.04750-2.5388018.5331016.87720HepG2HNRNPK
UPK3AENSG00000100373.549.54510123.44780-1.317106.598105.60140HepG2HNRNPL
UPK3AENSG00000100373.5133.0417044.868201.568006.941205.99510HepG2HNRNPLL
UPK3AENSG00000100373.547.7773091.12390-0.931502.550101.37400HepG2HSPD1
UPK3AENSG00000100373.5171.4138066.318601.369908.736307.51870HepG2IGF2BP1
UPK3AENSG00000100373.5100.91020190.75460-0.918604.331803.50330HepG2IGF2BP2
UPK3AENSG00000100373.515.09160179.02690-3.5684014.8163012.76070HepG2IGF2BP3
UPK3AENSG00000100373.5142.9119044.771901.674407.983605.69300HepG2ILF3
UPK3AENSG00000100373.5311.27460191.872100.697903.207602.11730HepG2KHSRP
UPK3AENSG00000100373.5138.2895085.595100.692002.859701.82820HepG2KIF1C
UPK3AENSG00000100373.564.59930131.45390-1.025003.630802.68040HepG2LARP4
UPK3AENSG00000100373.592.17360203.51230-1.142705.697704.81730HepG2MATR3
UPK3AENSG00000100373.523.9190073.57800-1.621103.460802.28770HepG2METAP2
UPK3AENSG00000100373.5144.02440208.30400-0.532401.891701.36240HepG2NCBP2
UPK3AENSG00000100373.590.55700134.37200-0.569302.016501.36310HepG2NOL12
UPK3AENSG00000100373.5116.7876039.795401.553106.055304.97360HepG2NSUN2
UPK3AENSG00000100373.515.3627082.91530-2.432209.409607.99980HepG2PARN
UPK3AENSG00000100373.525.8799073.24230-1.500804.239402.97060HepG2PCBP2
UPK3AENSG00000100373.513.8773041.18250-1.569302.951801.38030HepG2PNPT1
UPK3AENSG00000100373.535.8695069.55930-0.955502.347501.60000HepG2PRPF8
UPK3AENSG00000100373.5285.10620171.105000.736504.794504.11710HepG2PTBP1
UPK3AENSG00000100373.5328.21260128.263501.3554012.8605011.70350HepG2PUF60
UPK3AENSG00000100373.544.51220136.14990-1.6129010.100309.11560HepG2PUM1
UPK3AENSG00000100373.534.13910136.05510-1.9947011.4850010.16940HepG2PUM2
UPK3AENSG00000100373.5428.0053095.390902.1656040.4189038.61560HepG2PUS1
UPK3AENSG00000100373.512.7833070.65850-2.466606.492905.43770HepG2RAVER1
UPK3AENSG00000100373.59.53920203.50700-4.4151038.8623037.35910HepG2RBM22
UPK3AENSG00000100373.567.09640168.18640-1.325807.562006.49430HepG2RBM25
UPK3AENSG00000100373.540.9279097.35930-1.250204.388503.11860HepG2RBM27
UPK3AENSG00000100373.5214.1440079.060601.437407.375405.66350HepG2RCC2
UPK3AENSG00000100373.536.8780068.40140-0.891302.094501.55310HepG2RPS19
UPK3AENSG00000100373.514.5789068.80220-2.238606.903005.72350HepG2RRP9
UPK3AENSG00000100373.5240.0358074.602801.6858017.2228015.81250HepG2SAFB2
UPK3AENSG00000100373.520.2103081.26730-2.007606.861205.76580HepG2SF3A3
UPK3AENSG00000100373.5110.23140178.14990-0.692602.986202.37540HepG2SF3B4
UPK3AENSG00000100373.5215.91080122.969500.812004.874003.98310HepG2SLBP
UPK3AENSG00000100373.543.74730229.84280-2.3934023.9415022.84540HepG2SRFBP1
UPK3AENSG00000100373.510.5014047.80170-2.186502.470301.53000HepG2SRSF3
UPK3AENSG00000100373.572.87710126.63260-0.797103.137802.47680HepG2SRSF5
UPK3AENSG00000100373.531.72590151.27510-2.2534016.5006015.35590HepG2SRSF9
UPK3AENSG00000100373.5108.21160199.53900-0.882804.084303.48730HepG2SSB
UPK3AENSG00000100373.527.5496090.85650-1.721604.891803.23440HepG2SSRP1
UPK3AENSG00000100373.549.23690144.02380-1.548509.263208.23910HepG2SUCLG1
UPK3AENSG00000100373.5124.2243077.528600.680002.242601.39230HepG2SUPT6H
UPK3AENSG00000100373.5420.66200167.127801.331604.399503.71730HepG2TAF15
UPK3AENSG00000100373.565.78190125.29590-0.929603.485602.49330HepG2TUFM
UPK3AENSG00000100373.536.2264098.19790-1.438604.790603.97710HepG2U2AF1
UPK3AENSG00000100373.512.5269053.05110-2.082404.812903.80610HepG2UCHL5
UPK3AENSG00000100373.535.0965074.08200-1.077802.976201.89470HepG2UTP18
UPK3AENSG00000100373.5162.6204088.425800.878902.592801.89020HepG2XRN2
UPK3AENSG00000100373.545.21820131.15540-1.536303.316302.59140HepG2ZC3H8
UPK3AENSG00000100373.534.4145079.26510-1.203704.032303.40510HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UPK3A is not available on ENCORE database.





2 RBPs can affect the splicing of UPK3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUPK3AENSG00000100373.5chr22+456830524568333245681821456819774568906145689194-0.329000.000000.00003excludedHepG2SRSF1
MXEUPK3AENSG00000100373.5chr22+45684941456850244568906145689194456830524568333245691440456917550.264000.000340.067961includedHepG2DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UPK3A is not avaliable on ENCORE database.