TMUB1

General Information

Gene Name : TMUB1
Gene ID : ENSG00000164897.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMUB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMUB1	ENSG00000164897.12	0.90	8.10	4.50	ENCSR000AEF
HepG2	TMUB1	ENSG00000164897.12	58.56	5.98	32.27	ENCSR985KAT
K562	TMUB1	ENSG00000164897.12	152.07	49.85	100.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMUB1 is not avaliable on ENCORE database.

Proteins bound to RNA

TMUB1 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for TMUB1 is not avaliable on ENCORE database.

26 proteins are bound to TMUB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	150779890	150780007	-	5'-UTR,intron-Distal,intron-Proximal	5.89148	78.17671	K562	UPF1
chr7	150779713	150779832	-	5'-UTR,intron-Distal,intron-Proximal	3.43936	48.16247	K562	AQR
chr7	150778197	150778274	-	3'-UTR,intron-Distal	6.12619	46.38741	K562	UPF1
chr7	150780477	150780482	-	5'-UTR,intron-Distal	7.84614	43.90148	K562	AQR
chr7	150780482	150780516	-	5'-UTR,intron-Distal,intron-Proximal	6.86889	42.96404	K562	AQR
chr7	150779549	150779625	-	CDS,intron-Distal	4.65840	41.98431	K562	AQR
chr7	150779659	150779715	-	5'-UTR,intron-Distal,intron-Proximal	5.48694	38.65845	K562	UPF1
chr7	150778274	150778335	-	3'-UTR,intron-Distal	4.85926	37.55463	K562	UPF1
chr7	150780516	150780521	-	intron-Distal,intron-Proximal	5.39661	37.16384	K562	AQR
chr7	150779849	150779890	-	5'-UTR,intron-Distal	7.03673	32.88397	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 85 entries

eCLIP assay for TMUB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMUB1 is not available on ENCORE database.
127 RBPs can affect the levels of TMUB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMUB1 is not available on ENCORE database.

127 RBPs can affect the gene expression of TMUB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMUB1	ENSG00000164897.8	753.95890	224.93190	1.74490	47.28820	45.33230	HepG2	TRIM56
TMUB1	ENSG00000164897.8	198.03350	614.31820	-1.63320	31.39030	29.76760	HepG2	TAF15
TMUB1	ENSG00000164897.8	578.49780	204.63540	1.49920	28.40450	26.24450	HepG2	PPIL4
TMUB1	ENSG00000164897.8	670.31430	319.04310	1.07100	20.92140	19.23530	HepG2	HNRNPL
TMUB1	ENSG00000164897.8	4557.96500	3026.03860	0.59090	19.15510	17.78160	K562	AGGF1
TMUB1	ENSG00000164897.8	324.59760	683.38170	-1.07400	17.57270	16.59590	HepG2	SRSF1
TMUB1	ENSG00000164897.8	637.53190	317.90080	1.00380	17.85480	16.36440	HepG2	SLBP
TMUB1	ENSG00000164897.8	471.91670	203.86560	1.21080	17.41320	15.90810	HepG2	DNAJC2
TMUB1	ENSG00000164897.8	646.14530	351.94470	0.87640	14.94710	13.79600	HepG2	PUM1
TMUB1	ENSG00000164897.8	580.29710	204.31740	1.50590	14.44240	13.14190	HepG2	SAFB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 146 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMUB1 is not available on ENCORE database.

3 RBPs can affect the splicing of TMUB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TMUB1	ENSG00000164897.8	chr7	-	150779850	150779943	150779261	150779680	150780520	150780633	-0.26300	0.00001	0.00846	excluded	K562	TIA1
SE	TMUB1	ENSG00000164897.8	chr7	-	150779850	150779943	150779261	150779680	150780520	150780633	-0.29200	0.00053	0.09082	excluded	K562	SBDS
SE	TMUB1	ENSG00000164897.8	chr7	-	150779850	150779943	150779261	150779680	150780520	150780633	-0.13000	0.00073	0.02962	excluded	K562	HNRNPU

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMUB1

General Information

Functions

Localization

Domains (AlphaFold: TMUB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMUB1 is not avaliable on ENCORE database.

26 proteins are bound to TMUB1 RNA:

eCLIP assay for TMUB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMUB1 is not available on ENCORE database.

127 RBPs can affect the gene expression of TMUB1 :

The Knockdown/knockout RNA-Seq assay for TMUB1 is not available on ENCORE database.

3 RBPs can affect the splicing of TMUB1 :

The Knockdown/knockout RNA-Seq assay for TMUB1 is not avaliable on ENCORE database.