ST6GALNAC4

General Information

Gene Name : ST6GALNAC4
Gene ID : ENSG00000136840.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ST6GALNAC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ST6GALNAC4	ENSG00000136840.18	1.87	9.21	5.54	ENCSR000AEF
HepG2	ST6GALNAC4	ENSG00000136840.18	25.29	4.83	15.06	ENCSR985KAT
K562	ST6GALNAC4	ENSG00000136840.18	24.54	10.36	17.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.

Proteins bound to RNA

ST6GALNAC4 RNA is bound by 8 proteins.

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eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.

8 proteins are bound to ST6GALNAC4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	130670301	130670350	-	3'-UTR,intron-Distal	5.32598	13.04183	K562	PABPC4
chr9	130677001	130677098	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.13291	9.31281	HepG2	DDX3X
chr9	130679181	130679294	-	5'-UTR,intron-Distal,intron-Proximal	4.21646	7.63030	HepG2	DDX3X
chr9	130674915	130674959	-	3'-UTR,5'-UTR,CDS,intron-Distal	5.39272	6.06940	HepG2	DDX3X
chr9	130670764	130670836	-	CDS,intron-Distal	4.55204	5.79022	K562	YBX3
chr9	130670236	130670294	-	3'-UTR,intron-Distal	3.59573	5.10442	K562	YBX3
chr9	130670307	130670410	-	3'-UTR,intron-Distal	3.15755	4.75394	HepG2	LARP4
chr9	130677113	130677176	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.96943	4.22551	K562	SF3B4
chr9	130672183	130672236	-	CDS,intron-Distal,intron-Proximal	3.92935	4.00320	K562	AQR
chr9	130670334	130670434	-	3'-UTR,intron-Distal	4.33217	3.95192	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 11 entries

eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ST6GALNAC4 is not available on ENCORE database.
101 RBPs can affect the levels of ST6GALNAC4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.

101 RBPs can affect the gene expression of ST6GALNAC4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ST6GALNAC4	ENSG00000136840.14	817.79890	154.52770	2.40380	83.13710	80.57330	HepG2	SAFB2
ST6GALNAC4	ENSG00000136840.14	618.57980	170.11910	1.86230	44.86570	42.95700	HepG2	TRIM56
ST6GALNAC4	ENSG00000136840.14	164.64070	522.40990	-1.66590	28.97140	27.79880	HepG2	SRSF1
ST6GALNAC4	ENSG00000136840.14	191.82670	534.99940	-1.47970	23.91070	22.63270	HepG2	NELFE
ST6GALNAC4	ENSG00000136840.14	183.83170	469.55630	-1.35290	18.88190	17.60560	HepG2	TAF15
ST6GALNAC4	ENSG00000136840.14	554.35640	268.80940	1.04410	16.92870	15.71900	HepG2	PUM1
ST6GALNAC4	ENSG00000136840.14	225.78350	443.63530	-0.97440	12.55530	11.40590	HepG2	PUS1
ST6GALNAC4	ENSG00000136840.14	533.06720	252.81990	1.07610	11.20400	9.63080	HepG2	EIF4G2
ST6GALNAC4	ENSG00000136840.14	154.28700	318.03040	-1.04350	10.39520	9.23140	HepG2	ZC3H8
ST6GALNAC4	ENSG00000136840.14	310.84830	154.76840	1.00600	9.34890	8.03710	HepG2	PPIL4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 114 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.

11 RBPs can affect the splicing of ST6GALNAC4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130672604	130672807	130672229	130672337	130674546	130674617	0.67100	0.00000	0.00000	included	HepG2	HNRNPK
A3SS	ST6GALNAC4	ENSG00000136840.14	chr9	-	130672229	130672807	130672229	130672337	130674546	130674959	0.69500	0.00000	0.00000	longer	HepG2	HNRNPK
A3SS	ST6GALNAC4	ENSG00000136840.14	chr9	-	130672229	130672807	130672229	130672337	130674546	130674959	0.30600	0.00000	0.00024	longer	HepG2	SF3B4
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130678686	130678773	130676934	130677120	130679104	130679297	0.39100	0.00001	0.00081	included	K562	PTBP1
A3SS	ST6GALNAC4	ENSG00000136840.14	chr9	-	130672229	130672807	130672229	130672337	130674546	130674959	0.27000	0.00003	0.00679	longer	HepG2	PCBP1
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130672229	130672337	130670165	130670860	130674546	130674959	-0.36500	0.00010	0.00310	excluded	K562	SRSF1
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130678686	130678773	130676934	130677120	130679104	130679297	-0.23100	0.00010	0.00165	excluded	K562	AQR
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130678686	130678773	130676934	130677120	130679104	130679297	-0.20800	0.00014	0.00964	excluded	HepG2	SF3B4
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130678686	130678773	130676934	130677120	130679104	130679297	-0.26700	0.00017	0.00604	excluded	HepG2	SRSF1
SE	ST6GALNAC4	ENSG00000136840.14	chr9	-	130678686	130678773	130676934	130677120	130679104	130679297	-0.18800	0.00020	0.00516	excluded	HepG2	U2AF1

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ST6GALNAC4

General Information

Functions

Localization

Domains (AlphaFold: ST6GALNAC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.

8 proteins are bound to ST6GALNAC4 RNA:

eCLIP assay for ST6GALNAC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.

101 RBPs can affect the gene expression of ST6GALNAC4 :

The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not available on ENCORE database.

11 RBPs can affect the splicing of ST6GALNAC4 :

The Knockdown/knockout RNA-Seq assay for ST6GALNAC4 is not avaliable on ENCORE database.