SSUH2

General Information

Gene Name : SSUH2
Gene ID : ENSG00000125046.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSUH2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSUH2	ENSG00000125046.14	0.00	0.01	0.01	ENCSR000AEF
HepG2	SSUH2	ENSG00000125046.14	39.81	27.77	33.79	ENCSR985KAT
K562	SSUH2	ENSG00000125046.14	0.02	0.03	0.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSUH2 is not avaliable on ENCORE database.

Proteins bound to RNA

SSUH2 RNA is bound by 29 proteins.

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eCLIP assay for SSUH2 is not avaliable on ENCORE database.

29 proteins are bound to SSUH2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	8669436	8669584	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.35663	24.30226	HepG2	EFTUD2
chr3	8667912	8668008	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.03031	22.79640	HepG2	PPIG
chr3	8682296	8682315	-	intron-Distal	5.30989	22.77159	HepG2	PTBP1
chr3	8675421	8675526	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.22864	20.10548	HepG2	PPIG
chr3	8682226	8682296	-	intron-Distal	4.88432	19.37190	HepG2	PTBP1
chr3	8682315	8682365	-	intron-Distal	5.49457	17.71142	HepG2	PTBP1
chr3	8671336	8671401	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.16703	17.27120	HepG2	PPIG
chr3	8666849	8666990	-	intron-Distal	4.50639	15.39793	HepG2	PCBP2
chr3	8676978	8677058	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.94400	13.47664	HepG2	PPIG
chr3	8673735	8673796	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42644	13.35495	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 75 entries

eCLIP assay for SSUH2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSUH2 is not available on ENCORE database.
84 RBPs can affect the levels of SSUH2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSUH2 is not available on ENCORE database.

84 RBPs can affect the gene expression of SSUH2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSUH2	ENSG00000125046.10	1941.71860	1007.63580	0.94630	32.43350	30.75380	HepG2	PUS1
SSUH2	ENSG00000125046.10	428.55300	1320.90730	-1.62400	27.57050	26.09790	HepG2	AKAP1
SSUH2	ENSG00000125046.10	1848.10220	1079.43990	0.77570	25.59820	23.77140	HepG2	HNRNPL
SSUH2	ENSG00000125046.10	1629.31900	981.51690	0.73110	19.10450	17.89440	HepG2	SRSF9
SSUH2	ENSG00000125046.10	1384.92560	808.65510	0.77610	19.14600	17.63100	HepG2	UPF1
SSUH2	ENSG00000125046.10	1321.91110	780.72180	0.75960	16.92900	15.63400	HepG2	UTP3
SSUH2	ENSG00000125046.10	2263.63380	1087.13040	1.05800	15.24710	13.95760	HepG2	DDX6
SSUH2	ENSG00000125046.10	1938.22020	1175.05170	0.72190	14.73310	13.03530	HepG2	NOL12
SSUH2	ENSG00000125046.10	1166.81980	694.56810	0.74830	14.10240	12.74050	HepG2	SRSF7
SSUH2	ENSG00000125046.10	784.23560	1190.74380	-0.60250	12.31870	11.25630	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSUH2 is not available on ENCORE database.

15 RBPs can affect the splicing of SSUH2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSUH2	ENSG00000125046.10	chr3	-	8671349	8671412	8669383	8669469	8672490	8672615	-0.23300	0.00000	0.00000	excluded	HepG2	U2AF1
SE	SSUH2	ENSG00000125046.10	chr3	-	8667409	8667487	8667227	8667333	8667914	8668007	0.08200	0.00000	0.00005	included	HepG2	HNRNPK
SE	SSUH2	ENSG00000125046.10	chr3	-	8681633	8681755	8677444	8677543	8693675	8693747	0.11600	0.00000	0.00007	included	HepG2	MATR3
SE	SSUH2	ENSG00000125046.10	chr3	-	8681633	8681755	8677444	8677543	8693675	8693747	0.15800	0.00000	0.00089	included	HepG2	HNRNPL
A3SS	SSUH2	ENSG00000125046.10	chr3	-	8676985	8677090	8676985	8677067	8677444	8677543	0.58800	0.00000	0.00028	longer	HepG2	U2AF2
A3SS	SSUH2	ENSG00000125046.10	chr3	-	8676985	8677143	8676985	8677067	8677444	8677543	0.54800	0.00000	0.00000	longer	HepG2	U2AF1
SE	SSUH2	ENSG00000125046.10	chr3	-	8681633	8681755	8677444	8677543	8693675	8693747	0.11700	0.00001	0.00185	included	HepG2	G3BP1
A3SS	SSUH2	ENSG00000125046.10	chr3	-	8675351	8676331	8675351	8675627	8676985	8677067	0.17800	0.00001	0.00521	longer	HepG2	MATR3
SE	SSUH2	ENSG00000125046.10	chr3	-	8681633	8681755	8677444	8677543	8693675	8693747	0.15100	0.00002	0.01559	included	HepG2	BCCIP
SE	SSUH2	ENSG00000125046.10	chr3	-	8665551	8665738	8665134	8665342	8667227	8667333	0.12800	0.00004	0.00523	included	HepG2	HNRNPL

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSUH2

General Information

Functions

Localization

Domains (AlphaFold: SSUH2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSUH2 is not avaliable on ENCORE database.

29 proteins are bound to SSUH2 RNA:

eCLIP assay for SSUH2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSUH2 is not available on ENCORE database.

84 RBPs can affect the gene expression of SSUH2 :

The Knockdown/knockout RNA-Seq assay for SSUH2 is not available on ENCORE database.

15 RBPs can affect the splicing of SSUH2 :

The Knockdown/knockout RNA-Seq assay for SSUH2 is not avaliable on ENCORE database.