SRP9

General Information

Gene Name : SRP9
Gene ID : ENSG00000143742.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SRP9)

Not Available

Antibody Validation

Bethyl Labs: A305-455A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SRP9	ENSG00000143742.12	304.86	264.83	284.85	ENCSR000AEF
HepG2	SRP9	ENSG00000143742.12	158.28	297.03	227.65	ENCSR985KAT
K562	SRP9	ENSG00000143742.12	402.46	449.58	426.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SRP9		A305-455A	1				BGHcLV36-35, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
SRP9	K562	CRISPR	BGKcLV37-37,BGKcLV37-38	BGKcLV37-1,BGKcLV37-2	24.6,15.8	NotSatisfied	ENCORE2
SRP9	K562	CRISPR	BGKcLV48-73,BGKcLV48-74	BGKcLV48-1,BGKcLV48-2		Experimented	ENCORE2
SRP9	K562	CRISPR	BGKcLV48-75,BGKcLV48-76	BGKcLV48-1,BGKcLV48-2		Experimented	ENCORE2
SRP9	HepG2	CRISPR	SRP9-BGHcLV36-35,SRP9-BGHcLV36-36	NT-BGHcLV36-1,NT-BGHcLV36-2	75.7,84.7	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SRP9	Product_ID: A305-455A Lot_ID: 1 Source: Bethyl Labs Target Name: SRP9-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SRP9 is not avaliable on ENCORE database.

Proteins bound to RNA

SRP9 RNA is bound by 18 proteins.

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eCLIP assay for SRP9 is not avaliable on ENCORE database.

18 proteins are bound to SRP9 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	225975971	225976086	+	intron-Distal	4.13294	65.95605	K562	AKAP1
chr1	225976298	225976403	+	intron-Distal	5.24601	65.83499	K562	UPF1
chr1	225976315	225976415	+	intron-Distal	4.60306	61.77627	K562	AKAP1
chr1	225976013	225976062	+	intron-Distal	5.22860	39.05704	HepG2	UPF1
chr1	225977902	225977977	+	3'-UTR	3.45444	35.48979	K562	UPF1
chr1	225975956	225976013	+	intron-Distal	5.05135	31.99699	HepG2	UPF1
chr1	225976032	225976060	+	intron-Distal	4.38598	27.11049	K562	UPF1
chr1	225977106	225977196	+	3'-UTR	3.71101	26.77900	HepG2	SUB1
chr1	225977905	225977967	+	3'-UTR	4.49501	26.59563	K562	IGF2BP1
chr1	225976403	225976450	+	intron-Distal	5.87821	25.81294	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 55 entries

eCLIP assay for SRP9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SRP9 is not available on ENCORE database.
103 RBPs can affect the levels of SRP9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SRP9 is not available on ENCORE database.

103 RBPs can affect the gene expression of SRP9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SRP9	ENSG00000143742.8	3559.63030	9012.24880	-1.34020	49.64450	46.10110	K562	METAP2
SRP9	ENSG00000143742.8	4226.43820	9670.35970	-1.19410	45.74200	42.62580	K562	CPSF6
SRP9	ENSG00000143742.8	3420.15060	7113.27290	-1.05650	34.56700	32.14650	HepG2	NOL12
SRP9	ENSG00000143742.8	5960.29390	10787.17890	-0.85590	24.31870	22.20970	K562	SRSF1
SRP9	ENSG00000143742.8	3117.85250	7164.22570	-1.20030	22.13010	20.45070	HepG2	NCBP2
SRP9	ENSG00000143742.8	13239.43780	8934.24870	0.56730	21.53070	20.05860	K562	AGGF1
SRP9	ENSG00000143742.8	2002.22240	4034.94150	-1.01090	21.53320	19.72090	HepG2	U2AF1
SRP9	ENSG00000143742.8	9087.77800	16796.61340	-0.88620	21.07360	19.62890	K562	AQR
SRP9	ENSG00000143742.8	4435.00170	6704.46570	-0.59620	20.61130	19.11700	HepG2	SRSF5
SRP9	ENSG00000143742.8	17314.04940	9220.37280	0.90890	20.42630	18.98110	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 133 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SRP9 is not available on ENCORE database.

25 RBPs can affect the splicing of SRP9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.06700	0.00053	included	K562	WDR3
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.10200	0.00008	included	K562	AKAP8L
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.07200	0.00003	included	K562	METAP2
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	-0.11500	0.00000	excluded	K562	FXR1
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.11100	0.00000	included	K562	PUS1
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.14400	0.00000	included	K562	ILF3
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.06500	0.00010	included	HepG2	TIAL1
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.09700	0.00039	included	K562	UTP18
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	0.07600	0.00002	included	K562	UPF1
SE	SRP9	ENSG00000143742.8	chr1	+	225974563	225974687	225971001	225971070	225976941	225978168	-0.07900	0.00000	excluded	K562	HNRNPU

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SRP9

General Information

Functions

Localization

Domains (AlphaFold: SRP9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SRP9 is not avaliable on ENCORE database.

18 proteins are bound to SRP9 RNA:

eCLIP assay for SRP9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SRP9 is not available on ENCORE database.

103 RBPs can affect the gene expression of SRP9 :

The Knockdown/knockout RNA-Seq assay for SRP9 is not available on ENCORE database.

25 RBPs can affect the splicing of SRP9 :

The Knockdown/knockout RNA-Seq assay for SRP9 is not avaliable on ENCORE database.