RCN3

General Information

Gene Name : RCN3
Gene ID : ENSG00000142552.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RCN3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RCN3	ENSG00000142552.7	0.00	0.14	0.07	ENCSR000AEF
HepG2	RCN3	ENSG00000142552.7	6.15	2.09	4.12	ENCSR985KAT
K562	RCN3	ENSG00000142552.7	4.65	1.34	3.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RCN3 is not avaliable on ENCORE database.

Proteins bound to RNA

RCN3 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for RCN3 is not avaliable on ENCORE database.

15 proteins are bound to RCN3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	50040437	50040504	+	CDS,intron-Proximal	4.81469	22.79582	HepG2	PRPF8
chr19	50031332	50031425	+	intron-Distal,intron-Proximal	4.05447	11.04858	HepG2	EFTUD2
chr19	50046711	50046806	+	3'-UTR,intron-Distal	5.72553	10.29649	HepG2	PABPN1
chr19	50031325	50031414	+	intron-Proximal	4.55476	10.25704	HepG2	SF3B4
chr19	50046787	50046861	+	3'-UTR,intron-Distal	6.29501	10.19274	K562	PABPC4
chr19	50045809	50045856	+	CDS,intron-Distal,intron-Proximal	5.55218	10.01628	HepG2	PABPN1
chr19	50042403	50042435	+	CDS,intron-Distal	3.63396	9.51790	HepG2	PPIG
chr19	50031345	50031382	+	intron-Proximal	4.54537	8.74054	HepG2	PPIG
chr19	50031665	50031742	+	5'-UTR,CDS,intron-Proximal	3.77769	8.60713	HepG2	SF3B4
chr19	50045831	50045866	+	CDS,intron-Distal	3.50989	8.43905	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 32 entries

eCLIP assay for RCN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RCN3 is not available on ENCORE database.
114 RBPs can affect the levels of RCN3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.

114 RBPs can affect the gene expression of RCN3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RCN3	ENSG00000142552.3	40.54690	245.95170	-2.60070	29.59510	27.75080	K562	FXR1
RCN3	ENSG00000142552.3	994.71800	343.22040	1.53510	29.46950	26.30270	K562	ATP5C1
RCN3	ENSG00000142552.3	944.38590	316.03620	1.57920	21.36390	19.66060	K562	RBM15
RCN3	ENSG00000142552.3	357.95350	129.39090	1.46790	19.28710	18.19480	HepG2	SSB
RCN3	ENSG00000142552.3	977.96380	388.79590	1.33070	18.47970	15.88990	K562	MBNL1
RCN3	ENSG00000142552.3	320.17630	89.95130	1.83160	17.39730	15.82630	HepG2	MAGOH
RCN3	ENSG00000142552.3	397.78560	157.87820	1.33310	16.26360	15.00500	HepG2	ETF1
RCN3	ENSG00000142552.3	294.38860	65.60120	2.16580	16.59110	14.84520	HepG2	XRN2
RCN3	ENSG00000142552.3	181.26410	41.07180	2.14180	15.62880	13.95760	HepG2	PPIL4
RCN3	ENSG00000142552.3	493.21230	229.51660	1.10350	15.01730	11.95500	K562	DDX6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 130 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.

3 RBPs can affect the splicing of RCN3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RCN3	ENSG00000142552.3	chr19	+	50031488	50031638	50030874	50031315	50031723	50031971	-0.68500	0.00053	0.09714	excluded	HepG2	DKC1
A3SS	RCN3	ENSG00000142552.3	chr19	+	50042264	50042436	50042375	50042436	50040289	50040462	0.08300	0.00473	0.02752	longer	K562	AQR
SE	RCN3	ENSG00000142552.3	chr19	+	50042375	50042436	50040289	50040462	50045809	50046009	-0.19600	0.00678	0.08774	excluded	K562	HNRNPC

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RCN3

General Information

Functions

Localization

Domains (AlphaFold: RCN3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RCN3 is not avaliable on ENCORE database.

15 proteins are bound to RCN3 RNA:

eCLIP assay for RCN3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.

114 RBPs can affect the gene expression of RCN3 :

The Knockdown/knockout RNA-Seq assay for RCN3 is not available on ENCORE database.

3 RBPs can affect the splicing of RCN3 :

The Knockdown/knockout RNA-Seq assay for RCN3 is not avaliable on ENCORE database.