NDC80

General Information

Gene Name : NDC80
Gene ID : ENSG00000080986.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NDC80)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NDC80	ENSG00000080986.12	42.30	37.43	39.86	ENCSR000AEF
HepG2	NDC80	ENSG00000080986.12	16.37	31.58	23.98	ENCSR985KAT
K562	NDC80	ENSG00000080986.12	57.21	56.00	56.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NDC80 is not avaliable on ENCORE database.

Proteins bound to RNA

NDC80 RNA is bound by 18 proteins.

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eCLIP assay for NDC80 is not avaliable on ENCORE database.

18 proteins are bound to NDC80 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	2608697	2608771	+	CDS,intron-Proximal	4.16445	25.63929	K562	UCHL5
chr18	2582604	2582677	+	3'-UTR,intron-Distal	4.85693	25.57370	K562	KHSRP
chr18	2577578	2577724	+	intron-Distal,intron-Proximal	6.08958	21.72221	K562	KHSRP
chr18	2573048	2573088	+	CDS,intron-Proximal	4.31559	18.62108	K562	PUM2
chr18	2590016	2590120	+	CDS,intron-Proximal	3.00554	18.34068	K562	UCHL5
chr18	2582785	2582804	+	3'-UTR,intron-Distal	4.43352	18.14619	K562	KHSRP
chr18	2585143	2585198	+	CDS	3.71689	16.13955	K562	UCHL5
chr18	2616550	2616628	+	3'-UTR,CDS	5.29457	15.89350	K562	PUM2
chr18	2582744	2582785	+	3'-UTR,intron-Distal	4.21395	15.06734	K562	KHSRP
chr18	2590036	2590100	+	CDS	3.79285	14.47436	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for NDC80 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NDC80 is not available on ENCORE database.
145 RBPs can affect the levels of NDC80.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NDC80 is not available on ENCORE database.

145 RBPs can affect the gene expression of NDC80 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NDC80	ENSG00000080986.8	39.26970	498.73170	-3.66680	94.24090	92.27510	HepG2	ZNF622
NDC80	ENSG00000080986.8	17.18930	510.14800	-4.89130	90.03870	87.75270	HepG2	BOP1
NDC80	ENSG00000080986.8	120.53690	795.26750	-2.72200	79.12140	77.11550	HepG2	RBM22
NDC80	ENSG00000080986.8	185.12540	898.21690	-2.27860	77.55620	75.84100	HepG2	SRFBP1
NDC80	ENSG00000080986.8	67.56040	541.13990	-3.00180	66.65400	64.81530	HepG2	TIAL1
NDC80	ENSG00000080986.8	40.99510	544.43720	-3.73120	66.78110	64.44950	HepG2	SUPV3L1
NDC80	ENSG00000080986.8	63.51400	557.55160	-3.13400	62.16610	59.99290	HepG2	RPLP0
NDC80	ENSG00000080986.8	132.12840	586.15630	-2.14930	55.31820	53.25210	HepG2	CKAP4
NDC80	ENSG00000080986.8	87.84750	453.47300	-2.36790	47.04930	44.93580	HepG2	UPF1
NDC80	ENSG00000080986.8	249.37930	958.46930	-1.94240	46.36440	44.31560	HepG2	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 164 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NDC80 is not available on ENCORE database.

7 RBPs can affect the splicing of NDC80 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NDC80	ENSG00000080986.8	chr18	+	2608698	2608829			2606379	2606506	2610757	2610860	-0.10600	0.00000	0.00000	excluded	K562	AQR
SE	NDC80	ENSG00000080986.8	chr18	+	2578925	2579028			2577967	2578140	2585111	2585201	-0.06700	0.00000	0.00000	excluded	K562	AQR
SE	NDC80	ENSG00000080986.8	chr18	+	2577234	2577356			2574987	2575065	2577744	2577868	0.18100	0.00000	0.00000	included	K562	HNRNPC
A3SS	NDC80	ENSG00000080986.8	chr18	+	2610741	2610860			2610757	2610860	2608698	2608829	0.11800	0.00000	0.00000	longer	K562	AQR
A3SS	NDC80	ENSG00000080986.8	chr18	+	2574963	2575065			2574987	2575065	2572975	2573085	0.13700	0.00000	0.00000	longer	K562	AQR
A5SS	NDC80	ENSG00000080986.8	chr18	+	2571563	2571768			2571563	2571682	2572975	2573085	0.05600	0.00000	0.00005	longer	K562	U2AF1
A5SS	NDC80	ENSG00000080986.8	chr18	+	2571563	2571768			2571563	2571682	2572975	2573085	0.08600	0.00000	0.00000	longer	K562	AQR
MXE	NDC80	ENSG00000080986.8	chr18	+	2608644	2608829	2610757	2610860	2606413	2606506	2616435	2616634	0.06000	0.00013	0.00399	1included	K562	U2AF1
MXE	NDC80	ENSG00000080986.8	chr18	+	2608698	2608829	2610757	2610860	2606413	2606506	2616435	2616634	0.13700	0.00028	0.02826	1included	K562	SERBP1
A3SS	NDC80	ENSG00000080986.8	chr18	+	2595372	2595620			2595414	2595620	2590016	2590161	0.07600	0.00055	0.01617	longer	HepG2	U2AF2

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NDC80

General Information

Functions

Localization

Domains (AlphaFold: NDC80)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NDC80 is not avaliable on ENCORE database.

18 proteins are bound to NDC80 RNA:

eCLIP assay for NDC80 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NDC80 is not available on ENCORE database.

145 RBPs can affect the gene expression of NDC80 :

The Knockdown/knockout RNA-Seq assay for NDC80 is not available on ENCORE database.

7 RBPs can affect the splicing of NDC80 :

The Knockdown/knockout RNA-Seq assay for NDC80 is not avaliable on ENCORE database.