LSS

General Information

Gene Name : LSS
Gene ID : ENSG00000160285.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LSS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LSS	ENSG00000160285.14	11.57	16.31	13.94	ENCSR000AEF
HepG2	LSS	ENSG00000160285.14	71.93	37.79	54.86	ENCSR985KAT
K562	LSS	ENSG00000160285.14	31.27	25.13	28.20	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LSS is not avaliable on ENCORE database.

Proteins bound to RNA

LSS RNA is bound by 66 proteins.

CanvasJS.com

eCLIP assay for LSS is not avaliable on ENCORE database.

66 proteins are bound to LSS RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	47614065	47614144	-	intron-Distal	6.48035	400.00000	K562	AGGF1
chr21	47613568	47613596	-	CDS,intron-Distal	4.55452	400.00000	K562	AGGF1
chr21	47613514	47613538	-	intron-Distal	5.08875	400.00000	K562	AGGF1
chr21	47612260	47612337	-	intron-Distal,intron-Proximal	6.32389	400.00000	K562	AGGF1
chr21	47613598	47613606	-	CDS,intron-Distal	5.06870	400.00000	K562	AGGF1
chr21	47613626	47613650	-	CDS,intron-Distal	4.60730	400.00000	K562	AGGF1
chr21	47612418	47612451	-	CDS,intron-Distal,intron-Proximal	6.58975	400.00000	K562	AGGF1
chr21	47613607	47613626	-	CDS,intron-Distal	4.79727	400.00000	K562	AGGF1
chr21	47613128	47613171	-	intron-Distal,intron-Proximal	5.39643	84.16340	K562	AGGF1
chr21	47612467	47612513	-	CDS,intron-Distal,intron-Proximal	6.13409	82.33310	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 544 entries

eCLIP assay for LSS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LSS is not available on ENCORE database.
176 RBPs can affect the levels of LSS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LSS is not available on ENCORE database.

176 RBPs can affect the gene expression of LSS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LSS	ENSG00000160285.10	22350.20040	4484.14060	2.31730	99999.99999	99999.99999	HepG2	SSB
LSS	ENSG00000160285.10	7413.10120	1724.38280	2.10390	137.95070	135.44210	HepG2	TIAL1
LSS	ENSG00000160285.10	1750.73840	4209.08440	-1.26550	96.54090	94.14750	HepG2	PUM1
LSS	ENSG00000160285.10	2191.87300	6767.12670	-1.62640	83.05650	79.83870	HepG2	RBM15
LSS	ENSG00000160285.10	7770.38660	3801.99910	1.03110	82.05870	79.48570	HepG2	SLBP
LSS	ENSG00000160285.10	5640.81320	1885.83600	1.58060	71.34100	68.63820	HepG2	IGF2BP1
LSS	ENSG00000160285.10	14738.26470	2494.12000	2.56290	68.27430	65.84570	HepG2	HNRNPLL
LSS	ENSG00000160285.10	4336.54490	1915.12750	1.17900	59.64500	57.21860	HepG2	HNRNPF
LSS	ENSG00000160285.10	4611.76800	8606.11510	-0.90000	53.70390	52.20490	HepG2	SRSF1
LSS	ENSG00000160285.10	1835.30110	3991.31330	-1.12080	54.34520	51.82900	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 216 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LSS is not available on ENCORE database.

42 RBPs can affect the splicing of LSS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	LSS	ENSG00000160285.10	chr21	-	47610989	47611149	47608359	47608735	47611794	47611857	-0.08600	0.00077	excluded	HepG2	RBM22
SE	LSS	ENSG00000160285.10	chr21	-	47620354	47620460	47616115	47616181	47625749	47625855	0.31000	0.00000	included	HepG2	U2AF2
SE	LSS	ENSG00000160285.10	chr21	-	47610989	47611149	47608359	47608735	47611794	47613401	-0.14200	0.00007	excluded	K562	FXR1
SE	LSS	ENSG00000160285.10	chr21	-	47620354	47620460	47616115	47616181	47625749	47625855	0.10200	0.00000	included	HepG2	MATR3
SE	LSS	ENSG00000160285.10	chr21	-	47610989	47611149	47608359	47608735	47611794	47613401	-0.18600	0.00002	excluded	HepG2	TIAL1
SE	LSS	ENSG00000160285.10	chr21	-	47616115	47616181	47615589	47615670	47625749	47625855	-0.35500	0.00000	excluded	K562	TARDBP
SE	LSS	ENSG00000160285.10	chr21	-	47616115	47616181	47615589	47615670	47625749	47625855	-0.26300	0.00000	excluded	K562	HNRNPU
A3SS	LSS	ENSG00000160285.10	chr21	-	47616115	47616282	47616115	47616181	47625749	47625855	0.14200	0.00000	longer	HepG2	QKI
A3SS	LSS	ENSG00000160285.10	chr21	-	47629467	47629699	47629467	47629539	47630601	47630658	0.16300	0.00057	longer	HepG2	MATR3
A3SS	LSS	ENSG00000160285.10	chr21	-	47615589	47615831	47615589	47615670	47616115	47616181	0.24900	0.00031	longer	K562	PUS1

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LSS

General Information

Functions

Localization

Domains (AlphaFold: LSS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LSS is not avaliable on ENCORE database.

66 proteins are bound to LSS RNA:

eCLIP assay for LSS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LSS is not available on ENCORE database.

176 RBPs can affect the gene expression of LSS :

The Knockdown/knockout RNA-Seq assay for LSS is not available on ENCORE database.

42 RBPs can affect the splicing of LSS :

The Knockdown/knockout RNA-Seq assay for LSS is not avaliable on ENCORE database.