HDAC10

General Information

Gene Name : HDAC10
Gene ID : ENSG00000100429.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HDAC10)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HDAC10	ENSG00000100429.17	0.73	2.92	1.82	ENCSR000AEF
HepG2	HDAC10	ENSG00000100429.17	21.75	3.39	12.57	ENCSR985KAT
K562	HDAC10	ENSG00000100429.17	10.41	4.25	7.33	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HDAC10 is not avaliable on ENCORE database.

Proteins bound to RNA

HDAC10 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for HDAC10 is not avaliable on ENCORE database.

23 proteins are bound to HDAC10 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	50683633	50683789	-	3'-UTR,intron-Distal,intron-Proximal	6.85849	51.45386	HepG2	DDX59
chr22	50687465	50687564	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.61270	30.68075	HepG2	PRPF8
chr22	50684416	50684521	-	3'-UTR,CDS,intron-Distal	4.22345	24.45722	HepG2	PPIG
chr22	50687441	50687524	-	intron-Distal,intron-Proximal	4.33914	23.08908	HepG2	RBFOX2
chr22	50683682	50683844	-	3'-UTR,intron-Distal,intron-Proximal	4.44584	20.63339	HepG2	HNRNPK
chr22	50684103	50684167	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.96616	19.20558	HepG2	PPIG
chr22	50688059	50688123	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.43814	16.64655	HepG2	PPIG
chr22	50687559	50687644	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.55383	15.93877	K562	DDX24
chr22	50686055	50686117	-	intron-Distal,intron-Proximal	4.99540	15.14250	HepG2	EFTUD2
chr22	50684728	50684761	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06389	14.72440	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 104 entries

eCLIP assay for HDAC10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HDAC10 is not available on ENCORE database.
100 RBPs can affect the levels of HDAC10.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HDAC10 is not available on ENCORE database.

100 RBPs can affect the gene expression of HDAC10 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HDAC10	ENSG00000100429.13	581.37310	251.63330	1.20800	19.12020	17.78740	HepG2	SF3B4
HDAC10	ENSG00000100429.13	332.03450	124.11650	1.41950	17.70140	16.43640	HepG2	TRIM56
HDAC10	ENSG00000100429.13	528.85770	241.71700	1.12950	16.73410	15.60690	HepG2	PTBP1
HDAC10	ENSG00000100429.13	270.20920	112.46310	1.26450	13.31820	11.99590	HepG2	DNAJC2
HDAC10	ENSG00000100429.13	474.11610	248.05920	0.93450	12.98280	11.62150	HepG2	HNRNPL
HDAC10	ENSG00000100429.13	667.18400	249.51180	1.41890	12.61270	11.31590	HepG2	NCBP2
HDAC10	ENSG00000100429.13	267.60390	112.75350	1.24680	11.88910	10.69780	HepG2	SAFB2
HDAC10	ENSG00000100429.13	370.16750	166.10590	1.15600	11.61390	9.82150	K562	TIA1
HDAC10	ENSG00000100429.13	475.99580	210.10720	1.17970	11.59050	9.57870	K562	EFTUD2
HDAC10	ENSG00000100429.13	460.83750	254.55870	0.85620	10.13270	9.03670	HepG2	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 112 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HDAC10 is not available on ENCORE database.

25 RBPs can affect the splicing of HDAC10 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	HDAC10	ENSG00000100429.13	chr22	-	50684726	50685164			50684726	50684805	50685107	50685164	0.40400	0.00000	0.00000	included	HepG2	TAF15
RI	HDAC10	ENSG00000100429.13	chr22	-	50684726	50685164			50684726	50684805	50685107	50685164	0.25600	0.00002	0.00043	included	HepG2	U2AF1
RI	HDAC10	ENSG00000100429.13	chr22	-	50684726	50685164			50684726	50684805	50685107	50685164	-0.29300	0.00003	0.00125	excluded	K562	PTBP1
RI	HDAC10	ENSG00000100429.13	chr22	-	50686653	50686901			50686653	50686721	50686794	50686901	-0.13800	0.00004	0.00874	excluded	K562	TROVE2
SE	HDAC10	ENSG00000100429.13	chr22	-	50688855	50688952			50688491	50688589	50689199	50689334	-0.48100	0.00006	0.00863	excluded	HepG2	IGF2BP3
RI	HDAC10	ENSG00000100429.13	chr22	-	50689199	50689814			50689199	50689334	50689402	50689814	0.58400	0.00012	0.00097	included	K562	AQR
MXE	HDAC10	ENSG00000100429.13	chr22	-	50687090	50687180	50687259	50687319	50686794	50686901	50687531	50687597	-0.61600	0.00018	0.00430	2included	HepG2	SFPQ
MXE	HDAC10	ENSG00000100429.13	chr22	-	50688491	50688589	50688855	50688952	50688288	50688393	50689199	50689334	-0.49700	0.00018	0.00978	2included	HepG2	HNRNPC
MXE	HDAC10	ENSG00000100429.13	chr22	-	50687090	50687180	50687531	50687597	50686794	50686901	50687756	50687883	-0.44200	0.00019	0.00899	2included	HepG2	PCBP1
SE	HDAC10	ENSG00000100429.13	chr22	-	50686120	50686205			50685303	50685395	50686318	50686574	-0.52200	0.00020	0.00559	excluded	K562	SRSF1

Showing 1 to 10 of 36 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HDAC10

General Information

Functions

Localization

Domains (AlphaFold: HDAC10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HDAC10 is not avaliable on ENCORE database.

23 proteins are bound to HDAC10 RNA:

eCLIP assay for HDAC10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HDAC10 is not available on ENCORE database.

100 RBPs can affect the gene expression of HDAC10 :

The Knockdown/knockout RNA-Seq assay for HDAC10 is not available on ENCORE database.

25 RBPs can affect the splicing of HDAC10 :

The Knockdown/knockout RNA-Seq assay for HDAC10 is not avaliable on ENCORE database.