GRN

General Information

Gene Name : GRN
Gene ID : ENSG00000030582.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GRN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GRN	ENSG00000030582.17	19.49	81.40	50.45	ENCSR000AEF
HepG2	GRN	ENSG00000030582.17	203.38	74.31	138.84	ENCSR985KAT
K562	GRN	ENSG00000030582.17	45.81	23.68	34.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GRN is not avaliable on ENCORE database.

Proteins bound to RNA

GRN RNA is bound by 17 proteins.

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eCLIP assay for GRN is not avaliable on ENCORE database.

17 proteins are bound to GRN RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	42428955	42429065	+	CDS	5.21168	59.96405	HepG2	SND1
chr17	42430091	42430158	+	3'-UTR,CDS	6.03114	55.33230	HepG2	SND1
chr17	42429786	42429877	+	CDS	4.64976	52.83384	HepG2	SND1
chr17	42429881	42429939	+	CDS	3.61952	50.50827	HepG2	SND1
chr17	42430250	42430313	+	3'-UTR	4.58407	44.43128	HepG2	LARP4
chr17	42429724	42429786	+	CDS	4.59431	44.00281	HepG2	SND1
chr17	42426600	42426650	+	CDS	4.61332	43.56374	HepG2	RPS3
chr17	42429560	42429614	+	CDS	5.61275	38.98531	HepG2	SND1
chr17	42428777	42428827	+	CDS,intron-Distal,intron-Proximal	4.57009	37.03938	HepG2	SND1
chr17	42430059	42430091	+	3'-UTR,CDS,intron-Proximal	4.96615	35.39296	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 91 entries

eCLIP assay for GRN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GRN is not available on ENCORE database.
132 RBPs can affect the levels of GRN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GRN is not available on ENCORE database.

132 RBPs can affect the gene expression of GRN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GRN	ENSG00000030582.12	1303.48720	3861.37690	-1.56670	124.48350	121.56550	HepG2	ZC3H8
GRN	ENSG00000030582.12	7428.50760	3351.21090	1.14830	101.22890	98.27000	HepG2	HNRNPL
GRN	ENSG00000030582.12	6906.51870	3696.70490	0.90160	65.40610	63.33960	HepG2	PUM1
GRN	ENSG00000030582.12	1951.45750	4522.03980	-1.21240	59.02780	56.92070	HepG2	CKAP4
GRN	ENSG00000030582.12	5172.40060	2883.04110	0.84310	52.19320	49.64190	HepG2	ILF2
GRN	ENSG00000030582.12	6285.84660	3339.08100	0.91260	50.64800	48.44500	HepG2	SLBP
GRN	ENSG00000030582.12	4971.35680	2931.06370	0.76210	43.59120	41.60340	HepG2	SMN1
GRN	ENSG00000030582.12	9200.28720	3438.35140	1.41990	41.02450	39.00610	HepG2	SRSF5
GRN	ENSG00000030582.12	5792.17630	2742.24590	1.07860	39.27580	37.79500	HepG2	TIAL1
GRN	ENSG00000030582.12	4762.77130	2507.95310	0.92520	28.94860	27.05560	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 160 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GRN is not available on ENCORE database.

11 RBPs can affect the splicing of GRN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.09700	0.00000	0.00002	excluded	HepG2	SUPV3L1
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.09400	0.00000	0.00008	excluded	HepG2	DDX55
SE	GRN	ENSG00000030582.12	chr17	+	42423456	42423596	42422669	42422702	42426525	42426670	-0.10100	0.00006	0.00709	excluded	HepG2	TIAL1
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.17800	0.00009	0.04395	excluded	HepG2	XPO5
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.12600	0.00009	0.03118	excluded	HepG2	NOL12
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	0.07600	0.00010	0.00412	included	HepG2	HNRNPK
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.07800	0.00018	0.06435	excluded	HepG2	XRN2
SE	GRN	ENSG00000030582.12	chr17	+	42422898	42422973	42422669	42422702	42426525	42426670	-0.11900	0.00019	0.01818	excluded	HepG2	HNRNPL
SE	GRN	ENSG00000030582.12	chr17	+	42423456	42423596	42422669	42422702	42426525	42426670	-0.10100	0.00019	0.01171	excluded	HepG2	HNRNPU
SE	GRN	ENSG00000030582.12	chr17	+	42422933	42422973	42422632	42422702	42426525	42426670	-0.07600	0.00033	0.09117	excluded	HepG2	BCCIP

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GRN

General Information

Functions

Localization

Domains (AlphaFold: GRN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GRN is not avaliable on ENCORE database.

17 proteins are bound to GRN RNA:

eCLIP assay for GRN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GRN is not available on ENCORE database.

132 RBPs can affect the gene expression of GRN :

The Knockdown/knockout RNA-Seq assay for GRN is not available on ENCORE database.

11 RBPs can affect the splicing of GRN :

The Knockdown/knockout RNA-Seq assay for GRN is not avaliable on ENCORE database.