FOXRED1

General Information

Gene Name : FOXRED1
Gene ID : ENSG00000110074.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FOXRED1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FOXRED1	ENSG00000110074.10	21.99	29.64	25.81	ENCSR000AEF
HepG2	FOXRED1	ENSG00000110074.10	48.28	36.25	42.27	ENCSR985KAT
K562	FOXRED1	ENSG00000110074.10	52.98	54.02	53.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FOXRED1 is not avaliable on ENCORE database.

Proteins bound to RNA

FOXRED1 RNA is bound by 41 proteins.

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eCLIP assay for FOXRED1 is not avaliable on ENCORE database.

41 proteins are bound to FOXRED1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	126146201	126146286	+	intron-Proximal	8.24974	142.45398	HepG2	FAM120A
chr11	126146208	126146300	+	3'-UTR,CDS,intron-Proximal	7.46334	101.79729	K562	CSTF2T
chr11	126146210	126146297	+	3'-UTR,CDS,intron-Proximal	8.23307	100.95279	K562	FAM120A
chr11	126146202	126146280	+	intron-Proximal	8.19783	71.31370	HepG2	CSTF2T
chr11	126146202	126146294	+	3'-UTR,CDS,intron-Proximal	8.00753	49.50488	K562	EWSR1
chr11	126146207	126146268	+	intron-Proximal	8.58271	47.86945	K562	FASTKD2
chr11	126146205	126146296	+	3'-UTR,CDS,intron-Proximal	6.67349	45.30725	K562	GTF2F1
chr11	126146203	126146289	+	intron-Proximal	7.92553	34.16432	K562	FTO
chr11	126146212	126146285	+	intron-Proximal	5.49024	29.23907	K562	AKAP8L
chr11	126146200	126146284	+	intron-Proximal	7.82636	27.93997	K562	EIF4G2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 97 entries

eCLIP assay for FOXRED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FOXRED1 is not available on ENCORE database.
80 RBPs can affect the levels of FOXRED1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.

80 RBPs can affect the gene expression of FOXRED1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FOXRED1	ENSG00000110074.6	488.84670	1278.74550	-1.38730	46.96330	45.56020	HepG2	SRFBP1
FOXRED1	ENSG00000110074.6	281.16330	714.94870	-1.34640	15.11600	13.16170	K562	G3BP2
FOXRED1	ENSG00000110074.6	705.36060	1132.16580	-0.68270	10.65860	9.78710	HepG2	RBM22
FOXRED1	ENSG00000110074.6	474.19590	847.31710	-0.83740	10.50270	9.32040	HepG2	RPLP0
FOXRED1	ENSG00000110074.6	1718.40660	2634.57120	-0.61650	9.18360	7.48950	K562	ZC3H8
FOXRED1	ENSG00000110074.6	586.72070	270.47810	1.11710	8.23470	6.93140	HepG2	CNOT7
FOXRED1	ENSG00000110074.6	699.71120	1080.68250	-0.62710	7.06160	6.00920	HepG2	PUM2
FOXRED1	ENSG00000110074.6	269.60170	523.99250	-0.95870	7.04370	5.48420	K562	KRR1
FOXRED1	ENSG00000110074.6	2331.93860	3052.25700	-0.38830	6.84280	5.31200	K562	PUM2
FOXRED1	ENSG00000110074.6	294.26030	565.47410	-0.94240	6.42530	5.28200	HepG2	RRP9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.

9 RBPs can affect the splicing of FOXRED1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FOXRED1	ENSG00000110074.6	chr11	+	126141331	126141552			126139027	126139186	126142863	126142974	-0.30400	0.00000	0.00000	excluded	K562	HNRNPC
SE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916			126143230	126143349	126145221	126145323	-0.12100	0.00002	0.00045	excluded	K562	AQR
A5SS	FOXRED1	ENSG00000110074.6	chr11	+	126142863	126143052			126142863	126142974	126143230	126143349	0.15500	0.00009	0.00793	longer	K562	U2AF2
MXE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916	126145221	126145316	126143230	126143349	126145688	126145765	-0.09000	0.00012	0.00145	2included	K562	AQR
SE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916			126143230	126143349	126145221	126145323	-0.17100	0.00015	0.01425	excluded	HepG2	RBM22
MXE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916	126145221	126145323	126143230	126143349	126145688	126145765	-0.20000	0.00018	0.00951	2included	HepG2	XRN2
SE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916			126143230	126143349	126145221	126145323	-0.21400	0.00047	0.01066	excluded	K562	U2AF2
SE	FOXRED1	ENSG00000110074.6	chr11	+	126141331	126141552			126139027	126139186	126142863	126142974	-0.06700	0.00098	0.01197	excluded	K562	AQR
MXE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916	126145221	126145323	126143230	126143349	126145688	126145765	0.32600	0.00129	0.02715	1included	HepG2	FTO
SE	FOXRED1	ENSG00000110074.6	chr11	+	126144821	126144916			126143230	126143349	126145221	126145323	-0.29000	0.00218	0.02708	excluded	HepG2	U2AF2

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FOXRED1

General Information

Functions

Localization

Domains (AlphaFold: FOXRED1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FOXRED1 is not avaliable on ENCORE database.

41 proteins are bound to FOXRED1 RNA:

eCLIP assay for FOXRED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.

80 RBPs can affect the gene expression of FOXRED1 :

The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.

9 RBPs can affect the splicing of FOXRED1 :

The Knockdown/knockout RNA-Seq assay for FOXRED1 is not avaliable on ENCORE database.