FAM178A

General Information

Gene Name       : FAM178A
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM178A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM178A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM178A RNA is bound by 24 proteins.  







eCLIP assay for FAM178A is not avaliable on ENCORE database.





24 proteins are bound to FAM178A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10102721607102721696+3'-UTR,CDS,intron-Proximal3.047816.18258HepG2U2AF2
chr10102723331102723460+3'-UTR3.044973.48890K562KHSRP
chr10102722600102722678+3'-UTR3.798616.81104K562TARDBP
chr10102723371102723406+3'-UTR5.189564.80693HepG2FUBP3
chr10102723345102723393+3'-UTR4.203784.96821K562PUM2
chr10102723452102723568+3'-UTR7.2289518.69479K562PUM2
chr10102723409102723458+3'-UTR4.249075.05351HepG2FUBP3
chr10102672779102672859+5'-UTR3.737433.40928HepG2UCHL5
chr10102672721102672783+5'-UTR3.169538.86983HepG2NCBP2
chr10102672783102672845+5'-UTR3.799385.11373HepG2NCBP2
chr10102719186102719205+CDS3.406385.15776HepG2BCLAF1
chr10102676335102676364+CDS3.791043.56019HepG2GRWD1
chr10102689129102689194+CDS5.8158911.63584HepG2BCLAF1
chr10102689043102689145+CDS,intron-Proximal3.7537610.13718HepG2AQR
chr10102705201102705252+CDS4.073673.20743HepG2PPIG
chr10102698351102698406+CDS,intron-Proximal4.033789.09836HepG2BCLAF1
chr10102676705102676813+CDS3.5964613.09136HepG2BCLAF1
chr10102676467102676530+CDS3.770316.18214HepG2GRWD1
chr10102684647102684732+CDS,intron-Proximal3.076214.67625HepG2ZNF800
chr10102684674102684767+CDS,intron-Proximal4.574994.59919HepG2AQR
chr10102707572102707599+CDS3.567343.27569HepG2BCLAF1
chr10102705169102705255+CDS3.7704713.87674HepG2BCLAF1
chr10102690816102690878+CDS,intron-Proximal5.066475.01842HepG2PRPF8
chr10102710493102710555+CDS,intron-Proximal4.179714.77381HepG2TIA1
chr10102706808102706893+CDS3.509336.19339HepG2BCLAF1
chr10102676297102676344+CDS,intron-Proximal4.493244.27476HepG2AQR
chr10102698351102698430+CDS,intron-Proximal3.436955.30095HepG2PPIG
chr10102685718102685782+CDS,intron-Proximal3.056337.20615HepG2BCLAF1
chr10102678168102678199+CDS,intron-Proximal3.102513.39306HepG2GRWD1
chr10102676813102676902+CDS3.302738.43208HepG2BCLAF1
chr10102684277102684326+CDS3.930533.80193HepG2GRWD1
chr10102690739102690835+CDS4.019479.08790HepG2BCLAF1
chr10102684175102684223+CDS3.238704.06531HepG2GRWD1
chr10102685709102685779+CDS,intron-Proximal4.866876.94886HepG2GRWD1
chr10102676352102676456+CDS4.305544.44454K562UCHL5
chr10102707560102707599+CDS4.173684.08604HepG2PPIG
chr10102719211102719251+CDS4.819365.23259HepG2BCLAF1
chr10102684557102684615+CDS4.112537.89209HepG2BCLAF1
chr10102684623102684726+CDS3.4803312.29797HepG2BCLAF1
chr10102705085102705134+CDS,intron-Proximal5.760379.78817HepG2BCLAF1
chr10102685693102685802+CDS,intron-Proximal3.215044.98322HepG2AQR
chr10102678106102678211+CDS,intron-Proximal3.251815.10493HepG2AQR
chr10102676375102676467+CDS3.605637.67656HepG2GRWD1
chr10102684485102684676+CDS3.397355.78876HepG2FXR2
chr10102676687102676749+CDS3.171615.33987HepG2GRWD1
chr10102703844102703886+CDS,intron-Proximal4.602549.47159HepG2BCLAF1
chr10102674964102675007+intron-Distal4.135343.47043HepG2KHSRP
chr10102687109102687218+intron-Distal3.310805.90314HepG2KHSRP
chr10102689443102689556+intron-Distal,intron-Proximal4.974755.85495HepG2QKI
chr10102673702102673752+intron-Distal3.171005.88230K562CSTF2T
chr10102677587102677652+intron-Distal4.756444.38124HepG2ILF3
chr10102701161102701237+intron-Distal4.3010513.63692HepG2PTBP1
chr10102701137102701264+intron-Distal3.145937.68229HepG2HNRNPL
chr10102680247102680404+intron-Distal4.214334.17759HepG2QKI
chr10102673696102673754+intron-Distal6.187008.73280K562QKI
chr10102700919102700938+intron-Distal4.809243.78681HepG2PCBP2
chr10102700467102700539+intron-Distal3.161835.60501HepG2HNRNPK
chr10102700565102700648+intron-Distal4.301514.51699K562ILF3
chr10102721345102721426+intron-Distal4.426323.50357HepG2QKI
chr10102674959102675030+intron-Distal3.432519.19790HepG2U2AF2
chr10102674853102674896+intron-Distal4.294743.75546HepG2KHSRP
chr10102673697102673804+intron-Distal5.8391048.76551HepG2QKI
chr10102673693102673762+intron-Distal4.1546815.31035HepG2KHSRP
chr10102673685102673760+intron-Distal4.3736812.53734HepG2CSTF2
chr10102710008102710086+intron-Distal,intron-Proximal3.370803.35585HepG2QKI
chr10102700568102700651+intron-Distal5.8739627.52354HepG2PCBP2
chr10102711692102711748+intron-Distal4.353708.31636HepG2U2AF2
chr10102687012102687058+intron-Distal3.908864.50744HepG2U2AF2
chr10102700465102700551+intron-Distal5.4381412.97823HepG2PCBP2
chr10102687061102687196+intron-Distal4.068534.54401K562KHSRP
chr10102701273102701319+intron-Distal4.224948.21761HepG2PTBP1
chr10102700539102700626+intron-Distal5.045748.83475HepG2HNRNPK
chr10102701243102701273+intron-Distal5.3627810.55181HepG2PTBP1
chr10102686994102687065+intron-Distal4.432154.59452HepG2PCBP2
chr10102674065102674127+intron-Distal4.716625.18111K562CSTF2T
chr10102700560102700649+intron-Distal4.5060520.77181HepG2DDX59
chr10102701186102701357+intron-Distal3.783675.93532K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM178A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM178A is not available on ENCORE database.

  • 107 RBPs can affect the levels of FAM178A.  








The Knockdown/knockout RNA-Seq assay for FAM178A is not available on ENCORE database.





107 RBPs can affect the gene expression of FAM178A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM178AENSG00000119906.72550.425201945.397200.390603.094002.09640HepG2ABCF1
FAM178AENSG00000119906.71170.356301565.03810-0.419203.565502.45020HepG2ADAR
FAM178AENSG00000119906.73813.762302735.230900.4795011.5612010.32240HepG2AUH
FAM178AENSG00000119906.71020.461701833.72340-0.845604.542903.34110HepG2BCCIP
FAM178AENSG00000119906.71227.500902109.93110-0.7815012.5985011.44440HepG2BOP1
FAM178AENSG00000119906.71805.036701457.663000.308302.830601.58280HepG2BUD13
FAM178AENSG00000119906.71477.233601894.14370-0.358603.999903.09640HepG2CALR
FAM178AENSG00000119906.71169.102601490.00850-0.349902.462101.72850HepG2CIRBP
FAM178AENSG00000119906.71865.703602248.82370-0.269504.298903.50420HepG2CKAP4
FAM178AENSG00000119906.71270.957201937.02150-0.607907.389006.30780HepG2CPSF6
FAM178AENSG00000119906.71252.880601604.92700-0.357304.378403.09750HepG2YBX3
FAM178AENSG00000119906.71960.849602398.96310-0.290903.803503.07150HepG2CELF1
FAM178AENSG00000119906.72296.020702579.60150-0.168002.210601.53670HepG2DAZAP1
FAM178AENSG00000119906.71302.675502080.20210-0.6752020.4176018.65330HepG2DDX19B
FAM178AENSG00000119906.71908.873101607.165300.248102.487901.39410HepG2DDX1
FAM178AENSG00000119906.71285.045801675.37640-0.382702.847902.16140HepG2DDX21
FAM178AENSG00000119906.71342.056901638.56460-0.288002.422801.57290HepG2DDX24
FAM178AENSG00000119906.72272.845101687.150100.429803.392501.97970HepG2DDX27
FAM178AENSG00000119906.71212.860701802.80450-0.571802.557401.80970HepG2DDX55
FAM178AENSG00000119906.71431.360501883.15540-0.395803.504902.37420HepG2DDX5
FAM178AENSG00000119906.71966.678401559.654600.334402.012901.47860HepG2DDX6
FAM178AENSG00000119906.71776.191202151.84790-0.276803.518602.76920HepG2DKC1
FAM178AENSG00000119906.71217.442401562.00280-0.359505.956605.05280HepG2DNAJC2
FAM178AENSG00000119906.72143.326301541.999800.474902.316101.30990HepG2AGO1
FAM178AENSG00000119906.7918.346701307.99090-0.510204.024202.94590HepG2EIF3D
FAM178AENSG00000119906.73004.358402544.825600.239402.969102.10760HepG2EIF4G1
FAM178AENSG00000119906.71503.472902197.96290-0.547907.730406.34130HepG2EWSR1
FAM178AENSG00000119906.71981.964401500.719700.401203.811202.33230HepG2FKBP4
FAM178AENSG00000119906.71217.63960929.699600.389203.537902.65410HepG2FUBP3
FAM178AENSG00000119906.7789.808901164.62340-0.560305.006603.80110HepG2GEMIN5
FAM178AENSG00000119906.72647.847001877.906300.495604.967503.59740HepG2GNB2L1
FAM178AENSG00000119906.7799.588601136.02810-0.506702.914501.77210HepG2GRSF1
FAM178AENSG00000119906.7864.435901591.01440-0.8801015.1315013.81590HepG2HNRNPA1
FAM178AENSG00000119906.71532.024001823.72310-0.251402.890602.15890HepG2HNRNPF
FAM178AENSG00000119906.72155.553701570.283100.456904.619803.73650HepG2HNRNPK
FAM178AENSG00000119906.71444.387402349.85820-0.7021024.3442022.55240HepG2HNRNPL
FAM178AENSG00000119906.71171.655601758.00970-0.5854012.6936011.47340HepG2HNRNPU
FAM178AENSG00000119906.71179.664501795.74860-0.6062017.3384015.68600HepG2ILF2
FAM178AENSG00000119906.72960.225701585.618900.9006010.553808.51350HepG2KHSRP
FAM178AENSG00000119906.72253.293803042.05120-0.433002.064301.35570HepG2LARP4
FAM178AENSG00000119906.71409.077601839.34880-0.384402.487801.41630HepG2LARP7
FAM178AENSG00000119906.71206.177801931.92570-0.679605.550303.83970HepG2LIN28B
FAM178AENSG00000119906.7870.489401368.99350-0.653203.719202.50500HepG2METAP2
FAM178AENSG00000119906.72328.572001590.014000.550307.958306.65160HepG2MSI2
FAM178AENSG00000119906.71941.173302557.92070-0.398005.696404.60940HepG2NOL12
FAM178AENSG00000119906.71233.163701581.30950-0.358803.004901.32940HepG2NUP35
FAM178AENSG00000119906.72168.452301121.654200.950904.684203.50720HepG2PABPC1
FAM178AENSG00000119906.71468.877701740.12780-0.244502.658201.82470HepG2PARN
FAM178AENSG00000119906.7839.381501081.65980-0.365802.950101.67720HepG2PKM
FAM178AENSG00000119906.71184.677901568.00410-0.404405.303804.31260HepG2PPIL4
FAM178AENSG00000119906.71786.982501453.340200.298103.685602.80480HepG2PRPF4
FAM178AENSG00000119906.72765.158601544.427700.8402027.6583026.27800HepG2PTBP1
FAM178AENSG00000119906.72042.111802591.95620-0.344007.607706.72570HepG2PUM1
FAM178AENSG00000119906.72845.871802290.902400.312905.606104.78480HepG2PUS1
FAM178AENSG00000119906.73547.418901672.626401.0846037.5054035.65640HepG2QKI
FAM178AENSG00000119906.71225.227001969.11290-0.684504.104703.25420HepG2RAVER1
FAM178AENSG00000119906.71504.078002624.72610-0.8033021.7536020.58010HepG2RBM22
FAM178AENSG00000119906.71868.341001518.026100.299502.640201.97890HepG2RBM25
FAM178AENSG00000119906.72157.153001718.789200.327604.589503.92500HepG2NELFE
FAM178AENSG00000119906.7833.126001272.65090-0.611206.365305.47420HepG2RPS19
FAM178AENSG00000119906.71526.145302045.60790-0.422602.722401.92740HepG2RPS2
FAM178AENSG00000119906.71101.850302483.47720-1.172403.823502.17630HepG2SF1
FAM178AENSG00000119906.71711.349702851.61130-0.736607.483506.33900HepG2SF3A3
FAM178AENSG00000119906.71618.076102074.05020-0.358203.112702.36590HepG2SF3B1
FAM178AENSG00000119906.71924.152001607.925900.258903.019202.40470HepG2SF3B4
FAM178AENSG00000119906.71312.942101825.73600-0.4757011.072209.92090HepG2SMN1
FAM178AENSG00000119906.71150.190502005.99620-0.802407.359505.74920HepG2SMNDC1
FAM178AENSG00000119906.72219.095402964.57650-0.417908.961108.20070HepG2SRFBP1
FAM178AENSG00000119906.72581.243101678.335800.6209016.7927015.83650HepG2SRSF1
FAM178AENSG00000119906.71430.552402231.73110-0.641605.771904.28550HepG2SRSF3
FAM178AENSG00000119906.72844.720002410.796900.238703.022502.37120HepG2SRSF5
FAM178AENSG00000119906.71386.577601791.75300-0.369805.561904.63200HepG2SRSF7
FAM178AENSG00000119906.72242.058101365.423500.7154021.5820020.30460HepG2SRSF9
FAM178AENSG00000119906.73107.079202741.782800.180302.378801.79400HepG2SUCLG1
FAM178AENSG00000119906.71228.435701794.86280-0.547102.303101.67840HepG2SUPV3L1
FAM178AENSG00000119906.72072.854901508.579400.458307.098806.27280HepG2TAF15
FAM178AENSG00000119906.71601.640302042.47420-0.350802.966702.21880HepG2TARDBP
FAM178AENSG00000119906.72323.905601594.878200.543002.284701.31570HepG2TBRG4
FAM178AENSG00000119906.7760.128801203.15480-0.662503.100902.04750HepG2TFIP11
FAM178AENSG00000119906.71267.103501708.23240-0.431005.564804.90380HepG2TIAL1
FAM178AENSG00000119906.71012.193901723.50550-0.7679020.6128019.25390HepG2TRIM56
FAM178AENSG00000119906.7638.904201060.41650-0.731004.070703.14990HepG2UCHL5
FAM178AENSG00000119906.72149.654402528.94690-0.234403.165102.42890HepG2UPF1
FAM178AENSG00000119906.71966.390902599.37680-0.402606.973105.39120HepG2UTP18
FAM178AENSG00000119906.71516.793502441.59330-0.6868020.1345018.74110HepG2UTP3
FAM178AENSG00000119906.72700.989601935.762200.480503.061901.73130HepG2XRCC5
FAM178AENSG00000119906.71192.756301766.83960-0.566902.445601.76000HepG2XRN2
FAM178AENSG00000119906.71702.754601434.240000.247503.170402.45990HepG2ZC3H8
FAM178AENSG00000119906.71746.250002781.35240-0.6715025.6852024.44410HepG2ZNF622
FAM178AENSG00000119906.7421.90590718.78240-0.7686010.638009.62000K562AGGF1
FAM178AENSG00000119906.7542.28640747.91860-0.463802.692602.04850K562AKAP8L
FAM178AENSG00000119906.7542.53760784.73320-0.532505.858404.46900K562ATP5C1
FAM178AENSG00000119906.7752.13100608.300600.306102.416001.73600K562EIF2S2
FAM178AENSG00000119906.71184.12060943.427100.327703.428502.38590K562EIF4G2
FAM178AENSG00000119906.7439.14340615.95190-0.488103.496902.53400K562FIP1L1
FAM178AENSG00000119906.7613.86660469.747700.385902.334501.54730K562FMR1
FAM178AENSG00000119906.7630.56570384.482600.713608.437407.45220K562FXR1
FAM178AENSG00000119906.7552.89660416.945400.407101.922201.34470K562G3BP2
FAM178AENSG00000119906.7590.84910810.66880-0.456303.537802.68620K562GRSF1
FAM178AENSG00000119906.7533.72830710.03710-0.411803.117201.98910K562HNRNPL
FAM178AENSG00000119906.7325.82720500.13260-0.618205.714304.41850K562HNRNPU
FAM178AENSG00000119906.7578.22980793.75340-0.457003.352702.43500K562KIF1C
FAM178AENSG00000119906.7598.60040889.20080-0.570906.400004.90850K562MBNL1
FAM178AENSG00000119906.71014.81150679.392400.578803.079101.76930K562PABPC1
FAM178AENSG00000119906.7328.61580561.09330-0.771803.109202.04440K562PABPN1
FAM178AENSG00000119906.7625.85530454.041100.462902.701201.87950K562PCBP3
FAM178AENSG00000119906.7518.22360348.261400.573304.741003.69260K562POLR2G
FAM178AENSG00000119906.7450.48530699.22810-0.634305.765304.50730K562PPIG
FAM178AENSG00000119906.71850.327501029.392400.8459015.0174013.09350K562PUF60
FAM178AENSG00000119906.71473.331401094.621500.428505.546203.99430K562PUM1
FAM178AENSG00000119906.7577.74150741.78080-0.360602.325901.81890K562PUS1
FAM178AENSG00000119906.7419.02530722.71150-0.7864010.138609.02800K562RBM15
FAM178AENSG00000119906.7280.09300413.10230-0.560602.761601.94650K562RPS19
FAM178AENSG00000119906.7680.62120551.504500.303402.271601.52660K562SF3A3
FAM178AENSG00000119906.7728.89440417.617600.8034010.758209.16400K562U2AF2
FAM178AENSG00000119906.7765.34170592.642000.368803.520602.71740K562UPF1
FAM178AENSG00000119906.7790.13320554.555600.510703.504102.14590K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM178A is not available on ENCORE database.





1 RBPs can affect the splicing of FAM178A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSFAM178AENSG00000119906.7chr10+1026890391026891961026890731026891961026856681026857760.127000.001810.01176longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM178A is not avaliable on ENCORE database.