CHD7

General Information

Gene Name : CHD7
Gene ID : ENSG00000171316.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHD7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHD7	ENSG00000171316.11	24.86	21.45	23.16	ENCSR000AEF
HepG2	CHD7	ENSG00000171316.11	26.43	24.98	25.70	ENCSR985KAT
K562	CHD7	ENSG00000171316.11	17.09	20.91	19.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Proteins bound to RNA

CHD7 RNA is bound by 39 proteins.

CanvasJS.com

eCLIP assay for CHD7 is not avaliable on ENCORE database.

39 proteins are bound to CHD7 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	61592978	61593063	+	intron-Distal	5.15053	24.23218	HepG2	FAM120A
chr8	61592509	61592609	+	intron-Distal	3.88556	24.11079	HepG2	CSTF2T
chr8	61592006	61592072	+	intron-Distal	6.31833	22.77076	HepG2	CSTF2T
chr8	61592355	61592459	+	intron-Distal,intron-Proximal	4.52389	21.82571	HepG2	CSTF2T
chr8	61598034	61598111	+	intron-Distal	5.33057	19.52065	HepG2	HNRNPM
chr8	61592664	61592756	+	intron-Distal	4.22298	17.64729	HepG2	CSTF2T
chr8	61654603	61654712	+	CDS,intron-Distal	5.84183	16.39907	K562	LIN28B
chr8	61592995	61593071	+	intron-Distal	5.09673	16.29788	HepG2	CSTF2T
chr8	61765074	61765186	+	CDS,intron-Distal	4.23405	16.23904	HepG2	BCLAF1
chr8	61731143	61731220	+	intron-Distal	5.89692	13.99567	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 153 entries

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHD7 is not available on ENCORE database.
115 RBPs can affect the levels of CHD7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

115 RBPs can affect the gene expression of CHD7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHD7	ENSG00000171316.7	2474.85430	1398.32980	0.82350	27.03670	25.89170	HepG2	SRSF1
CHD7	ENSG00000171316.7	2270.00240	1264.57320	0.84390	26.58790	25.03030	HepG2	PCBP1
CHD7	ENSG00000171316.7	2319.80240	1339.68460	0.79200	23.15560	21.72690	HepG2	SF3B4
CHD7	ENSG00000171316.7	1930.24380	1137.60640	0.76270	22.12650	20.83920	HepG2	SRSF9
CHD7	ENSG00000171316.7	2526.58870	1393.59820	0.85830	21.66490	20.15900	HepG2	QKI
CHD7	ENSG00000171316.7	1944.33720	3136.73360	-0.69000	19.94880	18.22060	K562	UPF1
CHD7	ENSG00000171316.7	1612.90020	2546.93460	-0.65910	19.67800	18.14510	HepG2	UPF1
CHD7	ENSG00000171316.7	1387.98050	2323.63810	-0.74340	18.85240	17.22160	K562	EIF2S2
CHD7	ENSG00000171316.7	1784.21550	2919.10560	-0.71020	19.11220	17.12520	K562	SF3A3
CHD7	ENSG00000171316.7	1050.51760	2038.96400	-0.95670	18.88420	16.72970	K562	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

1 RBPs can affect the splicing of CHD7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CHD7	ENSG00000171316.7	chr8	+	61757390	61757622	61757422	61757622	61754405	61754611	0.15300	0.00005	0.00044	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61757777	61757968	61757808	61757968	61757390	61757622	0.05900	0.00171	0.01121	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61766872	61767082	61766921	61767082	61765387	61766059	0.11300	0.00244	0.01535	longer	K562	AQR
A3SS	CHD7	ENSG00000171316.7	chr8	+	61728886	61729060	61728945	61729060	61720775	61720831	0.07600	0.01747	0.08505	longer	K562	AQR

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHD7

General Information

Functions

Localization

Domains (AlphaFold: CHD7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHD7 is not avaliable on ENCORE database.

39 proteins are bound to CHD7 RNA:

eCLIP assay for CHD7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

115 RBPs can affect the gene expression of CHD7 :

The Knockdown/knockout RNA-Seq assay for CHD7 is not available on ENCORE database.

1 RBPs can affect the splicing of CHD7 :

The Knockdown/knockout RNA-Seq assay for CHD7 is not avaliable on ENCORE database.