CAPZA1

General Information

Gene Name       : CAPZA1
Gene ID             : ENSG00000116489.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAPZA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAPZA1ENSG00000116489.12208.62182.18195.40ENCSR000AEF
HepG2CAPZA1ENSG00000116489.1255.0881.5968.34ENCSR985KAT
K562CAPZA1ENSG00000116489.12206.79228.58217.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CAPZA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAPZA1 RNA is bound by 33 proteins.  







eCLIP assay for CAPZA1 is not avaliable on ENCORE database.





33 proteins are bound to CAPZA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1113212996113213063+3'-UTR3.513859.48850K562HNRNPC
chr1113212775113212836+3'-UTR3.794667.04715K562LIN28B
chr1113214155113214215+3'-UTR3.2137721.34784K562PABPC4
chr1113213098113213208+3'-UTR4.706195.32242HepG2PABPN1
chr1113213521113213573+3'-UTR3.8248712.25234K562TIA1
chr1113213511113213556+3'-UTR3.4081210.03535K562LIN28B
chr1113213261113213310+3'-UTR3.6472715.34044K562IGF2BP1
chr1113212787113212823+3'-UTR4.1561815.48933HepG2SUB1
chr1113213127113213173+3'-UTR4.2366221.47852K562IGF2BP1
chr1113212823113212915+3'-UTR5.4299884.58463HepG2SUB1
chr1113213878113213941+3'-UTR4.027456.23555K562LIN28B
chr1113214168113214212+3'-UTR4.331249.63817K562TIA1
chr1113213000113213057+3'-UTR3.374558.67917K562ZC3H11A
chr1113213006113213049+3'-UTR3.316077.34514K562IGF2BP1
chr1113212915113212966+3'-UTR4.9953836.14550HepG2SUB1
chr1113214164113214209+3'-UTR3.901096.25229K562IGF2BP2
chr1113213010113213020+3'-UTR3.1407934.61683K562TIA1
chr1113212840113212868+3'-UTR3.8307012.98873K562NOLC1
chr1113212789113212840+3'-UTR3.496659.74369K562NOLC1
chr1113213005113213010+3'-UTR4.1751618.82131K562TIA1
chr1113214042113214077+3'-UTR3.4130413.62122K562IGF2BP1
chr1113214079113214136+3'-UTR4.169803.32080HepG2FUBP3
chr1113212868113212921+3'-UTR4.4057416.15685K562NOLC1
chr1113214085113214131+3'-UTR4.113927.19148K562APOBEC3C
chr1113213890113213913+3'-UTR3.096658.19758K562YBX3
chr1113213020113213070+3'-UTR3.1768442.16164K562TIA1
chr1113213173113213261+3'-UTR3.5014439.21570K562IGF2BP1
chr1113162419113162507+5'-UTR,CDS,intron-Proximal3.3422924.58418K562DDX3X
chr1113201655113201663+CDS4.0536214.12811K562YBX3
chr1113209736113209767+CDS4.6814755.70525K562PUM2
chr1113197083113197152+CDS,intron-Distal,intron-Proximal3.124287.79800K562U2AF2
chr1113212164113212175+CDS,intron-Proximal4.166213.02060K562LIN28B
chr1113209702113209736+CDS4.0047332.21214K562PUM2
chr1113189830113189894+CDS,intron-Proximal3.189675.74981HepG2GRWD1
chr1113192053113192120+CDS,intron-Proximal4.603888.96422HepG2PRPF8
chr1113201590113201658+CDS,intron-Proximal4.213958.75853K562SF3B4
chr1113197131113197233+CDS,intron-Distal3.4035414.72409HepG2BCLAF1
chr1113209738113209768+CDS,intron-Proximal3.230094.18718K562LIN28B
chr1113189831113189888+CDS,intron-Proximal3.461499.53709K562RPS3
chr1113192043113192092+CDS,intron-Proximal3.095704.38893K562ZNF800
chr1113197274113197331+CDS,intron-Distal,intron-Proximal6.083945.68502HepG2PRPF8
chr1113197285113197293+CDS,intron-Distal3.8887212.63512K562YBX3
chr1113201671113201686+CDS3.9504014.78765K562YBX3
chr1113197281113197342+CDS,intron-Distal,intron-Proximal4.4705133.96537K562PRPF8
chr1113197257113197285+CDS,intron-Distal3.2714110.36151K562YBX3
chr1113202324113202333+CDS3.1344213.26528K562YBX3
chr1113162472113162506+CDS,intron-Proximal4.1160016.62258K562RPS3
chr1113197084113197141+CDS,intron-Distal,intron-Proximal3.335085.40232HepG2U2AF2
chr1113201654113201723+CDS3.158964.13104K562LIN28B
chr1113201648113201655+CDS3.532149.18871K562YBX3
chr1113201643113201648+CDS,intron-Proximal3.8104612.44888K562YBX3
chr1113212164113212180+CDS,intron-Proximal4.1291126.92085K562PUM2
chr1113201686113201698+CDS3.1107111.37641K562YBX3
chr1113201698113201720+CDS3.4713114.79885K562YBX3
chr1113199836113199868+intron-Distal3.559375.44125K562PTBP1
chr1113175914113176034+intron-Distal3.279513.45178K562MATR3
chr1113177463113177488+intron-Distal4.184666.91600K562LSM11
chr1113208769113208961+intron-Distal3.351875.96782K562MATR3
chr1113177488113177507+intron-Distal4.269635.52372K562LSM11
chr1113196746113196774+intron-Distal3.558029.68785K562KHSRP
chr1113177363113177412+intron-Distal6.1879755.32074K562LSM11
chr1113199901113200029+intron-Distal3.696557.21599HepG2PTBP1
chr1113199996113200029+intron-Distal3.397585.86727K562PTBP1
chr1113171994113172067+intron-Distal3.639244.28254HepG2MATR3
chr1113197046113197068+intron-Distal,intron-Proximal3.028075.20739K562KHSRP
chr1113175735113175822+intron-Distal3.245033.35103HepG2QKI
chr1113201009113201126+intron-Distal4.4442530.33191K562QKI
chr1113196985113197011+intron-Distal,intron-Proximal3.583327.19702K562KHSRP
chr1113171856113171907+intron-Distal5.317085.39854K562PTBP1
chr1113175738113175806+intron-Distal5.161366.75921K562QKI
chr1113196407113196491+intron-Distal3.383805.88228K562TIA1
chr1113201334113201388+intron-Distal3.019574.08204K562PTBP1
chr1113199904113199996+intron-Distal4.5893930.71897K562PTBP1
chr1113196933113196955+intron-Distal3.431038.24998K562KHSRP
chr1113195576113195634+intron-Distal3.367244.46957K562TIA1
chr1113177330113177363+intron-Distal5.9921148.34630K562LSM11
chr1113197342113197377+intron-Distal,intron-Proximal5.5178210.77996K562PRPF8
chr1113201265113201315+intron-Distal3.343324.75362K562PTBP1
chr1113171737113171817+intron-Distal4.257984.24113K562MATR3
chr1113172025113172091+intron-Distal3.058033.35050HepG2SUGP2
chr1113208881113208957+intron-Distal4.154864.32448K562PTBP1
chr1113177331113177391+intron-Distal5.5665720.71980HepG2LSM11
chr1113197011113197046+intron-Distal,intron-Proximal3.7089410.10950K562KHSRP
chr1113171982113172080+intron-Distal3.329605.68494K562MATR3
chr1113202221113202281+intron-Distal,intron-Proximal3.6553510.06276K562U2AF2
chr1113197388113197426+intron-Distal,intron-Proximal4.592634.23094K562TIA1
chr1113196703113196771+intron-Distal3.391654.03817HepG2KHSRP
chr1113197377113197431+intron-Distal,intron-Proximal5.5958811.79381K562PRPF8
chr1113196713113196746+intron-Distal3.7992812.46580K562KHSRP
chr1113171824113171910+intron-Distal3.294033.59803HepG2PTBP1
chr1113177412113177463+intron-Distal5.5839933.23615K562LSM11
chr1113203482113203532+intron-Distal3.814013.60940HepG2HNRNPC
chr1113196400113196493+intron-Distal3.256924.89503HepG2KHSRP
chr1113196871113196899+intron-Distal4.334489.20471K562KHSRP
chr1113196955113196985+intron-Distal3.463018.76942K562KHSRP
chr1113175393113175470+intron-Distal3.974753.16986HepG2QKI
chr1113198909113199023+intron-Distal3.622348.05068K562KHSRP
chr1113171779113171841+intron-Distal3.608575.02233K562PTBP1
chr1113198194113198248+intron-Distal4.605386.75669HepG2ILF3
chr1113201008113201082+intron-Distal5.296767.34317K562PTBP1
chr1113171835113171907+intron-Distal4.698615.90588K562MATR3
chr1113201046113201119+intron-Distal4.5669610.47376HepG2QKI
chr1113212343113212397+intron-Distal3.357607.01633K562KHSRP
chr1113196899113196920+intron-Distal4.173747.22994K562KHSRP
chr1113201738113201767+intron-Proximal5.292566.75320K562AQR
chr1113162536113162583+intron-Proximal4.859263.61992K562RBM22
chr1113162532113162553+intron-Proximal5.3063013.23057K562AQR
chr1113212273113212319+intron-Proximal3.471557.93121K562KHSRP
chr1113162553113162582+intron-Proximal4.929355.17615K562AQR
chr1113192123113192140+intron-Proximal4.173663.31110K562TIA1
chr1113162517113162580+intron-Proximal4.0572511.31506HepG2TIAL1
chr1113192144113192180+intron-Proximal3.376853.35536K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAPZA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAPZA1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of CAPZA1.  








The Knockdown/knockout RNA-Seq assay for CAPZA1 is not available on ENCORE database.





93 RBPs can affect the gene expression of CAPZA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAPZA1ENSG00000116489.82262.011601843.138200.295302.355501.36330HepG2AATF
CAPZA1ENSG00000116489.83412.294402245.532400.6036019.6355018.33800HepG2ACO1
CAPZA1ENSG00000116489.81716.643302316.87990-0.432604.111302.92330HepG2ADAR
CAPZA1ENSG00000116489.85616.536603621.111900.633106.929406.12970HepG2AKAP1
CAPZA1ENSG00000116489.82673.061002256.034200.244603.162302.34860HepG2AKAP8L
CAPZA1ENSG00000116489.81207.918201782.48020-0.561406.207705.20890HepG2CPSF6
CAPZA1ENSG00000116489.84086.437903226.992100.340605.603304.74980HepG2CELF1
CAPZA1ENSG00000116489.82681.960603470.01550-0.371709.366908.12780HepG2DAZAP1
CAPZA1ENSG00000116489.84346.645303468.986000.325302.503101.90570HepG2DDX3X
CAPZA1ENSG00000116489.81731.974602312.25470-0.416908.867207.77890HepG2DNAJC2
CAPZA1ENSG00000116489.82172.159902864.69700-0.399302.423801.86720HepG2EIF2S1
CAPZA1ENSG00000116489.81890.889003166.09230-0.743607.300406.26240HepG2EIF4A3
CAPZA1ENSG00000116489.82579.801503279.24340-0.346103.157302.28970HepG2EIF4G2
CAPZA1ENSG00000116489.82877.318902194.234800.390903.249302.34420HepG2EWSR1
CAPZA1ENSG00000116489.83342.953202423.038100.464203.946903.04070HepG2FIP1L1
CAPZA1ENSG00000116489.81493.536302020.64960-0.436103.395002.69080HepG2GPKOW
CAPZA1ENSG00000116489.81385.044202193.58370-0.663405.104303.58590HepG2GRSF1
CAPZA1ENSG00000116489.81804.070402619.91010-0.538307.097706.02720HepG2HNRNPC
CAPZA1ENSG00000116489.82111.233102764.54260-0.389006.921105.85570HepG2HNRNPF
CAPZA1ENSG00000116489.82745.297603160.98130-0.203403.366002.62900HepG2HNRNPL
CAPZA1ENSG00000116489.81218.106101928.33690-0.662707.953806.94810HepG2HNRNPLL
CAPZA1ENSG00000116489.82017.191201671.690600.270902.244701.38690HepG2HNRNPM
CAPZA1ENSG00000116489.82087.248102602.59450-0.318304.287203.54620HepG2HNRNPU
CAPZA1ENSG00000116489.82082.804002722.28950-0.386304.902403.96470HepG2IGF2BP1
CAPZA1ENSG00000116489.82212.935302658.47710-0.264604.143003.26310HepG2ILF2
CAPZA1ENSG00000116489.81068.058801709.78900-0.678808.692607.41800HepG2NSUN2
CAPZA1ENSG00000116489.83190.661102165.740500.558903.124802.17790HepG2PABPC1
CAPZA1ENSG00000116489.81334.879102929.16420-1.1338013.4668011.90160HepG2PABPC4
CAPZA1ENSG00000116489.82070.118002576.21830-0.315503.388202.46010HepG2PARN
CAPZA1ENSG00000116489.81650.171903053.88680-0.8880033.3998031.69180HepG2PCBP1
CAPZA1ENSG00000116489.81042.081501286.58390-0.304102.675201.46620HepG2PKM
CAPZA1ENSG00000116489.81629.822902321.31960-0.510206.818905.70260HepG2PPIL4
CAPZA1ENSG00000116489.83753.540002770.010100.438302.480601.32220HepG2PRPF6
CAPZA1ENSG00000116489.82738.882703284.53420-0.262102.399601.83880HepG2PUF60
CAPZA1ENSG00000116489.82898.427303486.61070-0.266605.670904.88490HepG2PUM1
CAPZA1ENSG00000116489.82941.340003484.10580-0.244302.571901.92510HepG2PUM2
CAPZA1ENSG00000116489.82768.214103365.38310-0.281803.322102.64670HepG2QKI
CAPZA1ENSG00000116489.84261.104102542.948800.744605.209104.25770HepG2RAVER1
CAPZA1ENSG00000116489.83278.653502617.354900.324903.150302.24110HepG2RBM15
CAPZA1ENSG00000116489.84821.693903460.472500.4785010.465609.60150HepG2RBM22
CAPZA1ENSG00000116489.81719.612202639.41300-0.618107.277705.65850HepG2RBM27
CAPZA1ENSG00000116489.82536.423803221.01770-0.344706.123205.25510HepG2RECQL
CAPZA1ENSG00000116489.81855.761602378.88900-0.358302.014701.33240HepG2RPS3A
CAPZA1ENSG00000116489.81569.989602317.77040-0.5620013.7951012.51910HepG2SAFB2
CAPZA1ENSG00000116489.81332.334102240.15840-0.749607.668705.55880HepG2SART3
CAPZA1ENSG00000116489.83223.646502414.019500.417202.717802.04970HepG2SF3A3
CAPZA1ENSG00000116489.82592.623303149.21800-0.280605.467704.53820HepG2SLBP
CAPZA1ENSG00000116489.82299.755802702.98770-0.233102.299001.70400HepG2SMN1
CAPZA1ENSG00000116489.85857.150303908.503100.5835022.9039021.82700HepG2SRFBP1
CAPZA1ENSG00000116489.84215.763003376.898000.320006.360005.71470HepG2SRSF1
CAPZA1ENSG00000116489.82282.362802716.05710-0.251003.309102.55700HepG2SRSF7
CAPZA1ENSG00000116489.82611.970603035.39500-0.216702.272701.75570HepG2TAF15
CAPZA1ENSG00000116489.81497.252701879.34720-0.327902.590101.88500HepG2TARDBP
CAPZA1ENSG00000116489.82304.258902789.00060-0.275402.621201.80700HepG2TIA1
CAPZA1ENSG00000116489.81245.280002529.19280-1.0222027.6759026.39810HepG2TIAL1
CAPZA1ENSG00000116489.81632.507902551.49490-0.6443015.2808014.10530HepG2TRIM56
CAPZA1ENSG00000116489.82582.881703208.74080-0.313003.383502.40730HepG2TUFM
CAPZA1ENSG00000116489.83352.150902072.659600.693509.881708.68170HepG2U2AF1
CAPZA1ENSG00000116489.81754.025703396.32930-0.9533015.2907013.30310HepG2UBE2L3
CAPZA1ENSG00000116489.81792.645202486.33820-0.471902.383001.70520HepG2XRN2
CAPZA1ENSG00000116489.82288.611001884.043400.280504.492403.66910HepG2ZC3H8
CAPZA1ENSG00000116489.87828.822206394.352200.291902.990101.75650K562AARS
CAPZA1ENSG00000116489.811418.672609665.987800.240304.464103.77380K562AGGF1
CAPZA1ENSG00000116489.88275.6046013787.00980-0.7364014.9041013.69360K562AQR
CAPZA1ENSG00000116489.86787.838607851.11770-0.209902.660601.38220K562BCCIP
CAPZA1ENSG00000116489.86531.628807586.60750-0.216003.507102.42070K562BCLAF1
CAPZA1ENSG00000116489.82367.637103433.56170-0.536303.918302.61930K562CCAR1
CAPZA1ENSG00000116489.88438.6614010853.44670-0.363106.930805.14730K562CPEB4
CAPZA1ENSG00000116489.84776.428306138.91080-0.362104.817803.78690K562CPSF6
CAPZA1ENSG00000116489.84965.737005755.57130-0.213002.395301.42210K562CSTF2
CAPZA1ENSG00000116489.86543.832607514.73620-0.199602.506701.35760K562DDX21
CAPZA1ENSG00000116489.89877.7371011232.23640-0.185402.591701.95870K562DDX47
CAPZA1ENSG00000116489.812618.2611010823.369300.221303.006402.08660K562DKC1
CAPZA1ENSG00000116489.86788.733607874.77450-0.214103.048201.76550K562EIF2S1
CAPZA1ENSG00000116489.85505.688107489.95900-0.444005.738904.56220K562EIF4A3
CAPZA1ENSG00000116489.813085.3899015542.03530-0.248203.985502.86200K562EIF4G2
CAPZA1ENSG00000116489.812607.777108429.559200.580705.240704.19660K562G3BP2
CAPZA1ENSG00000116489.84925.435006731.69530-0.450704.178002.39510K562GEMIN5
CAPZA1ENSG00000116489.86834.2159012869.10510-0.9131026.5558024.10810K562GRSF1
CAPZA1ENSG00000116489.83824.923706996.74810-0.8713023.1416021.49710K562HNRNPC
CAPZA1ENSG00000116489.84808.359106248.08620-0.377904.645503.11780K562HNRNPF
CAPZA1ENSG00000116489.87921.899809795.94820-0.306304.751103.57230K562HNRNPU
CAPZA1ENSG00000116489.813884.8507011543.991000.266302.386401.64400K562HSPD1
CAPZA1ENSG00000116489.85469.848007096.25540-0.375603.505501.80130K562LIN28B
CAPZA1ENSG00000116489.88507.6607010421.72270-0.292803.042702.16060K562MAGOH
CAPZA1ENSG00000116489.88097.6877010400.98990-0.361104.727503.48810K562MATR3
CAPZA1ENSG00000116489.85901.898608067.67490-0.4510014.0343012.37930K562MTPAP
CAPZA1ENSG00000116489.810804.526508381.436400.366302.378201.57410K562NAA15
CAPZA1ENSG00000116489.87784.088108964.07410-0.203605.649504.63890K562NSUN2
CAPZA1ENSG00000116489.85140.626206888.93860-0.422304.304002.33540K562NUSAP1
CAPZA1ENSG00000116489.87909.7959010185.93240-0.364905.114603.22130K562PCBP1
CAPZA1ENSG00000116489.88073.432806534.022500.305102.951102.17780K562PRPF8
CAPZA1ENSG00000116489.84254.557906273.31240-0.560209.095407.25600K562PSIP1
CAPZA1ENSG00000116489.88626.2912010125.15490-0.231102.287901.67670K562PTBP1
CAPZA1ENSG00000116489.814627.7819017672.59070-0.272804.660703.40430K562PUM2
CAPZA1ENSG00000116489.814052.852109975.091500.494406.725405.92180K562PUS1
CAPZA1ENSG00000116489.811531.077209718.823700.246603.292702.65460K562RBM15
CAPZA1ENSG00000116489.84597.586905723.55960-0.316003.833202.66290K562RCC2
CAPZA1ENSG00000116489.88132.2335010218.17900-0.329402.966501.83130K562NELFE
CAPZA1ENSG00000116489.87795.195008845.01140-0.182302.235801.49640K562SF3A3
CAPZA1ENSG00000116489.84414.132705425.78410-0.297702.896401.84040K562SRFBP1
CAPZA1ENSG00000116489.87488.182009061.88320-0.275207.088305.66630K562SRPK2
CAPZA1ENSG00000116489.84112.887005401.25220-0.393104.649403.22070K562SRSF4
CAPZA1ENSG00000116489.86973.060305851.371200.252902.209701.47460K562SYNCRIP
CAPZA1ENSG00000116489.86021.2451010046.13310-0.7385012.2927010.61370K562TARDBP
CAPZA1ENSG00000116489.87183.684909690.45860-0.431806.930205.54290K562TIA1
CAPZA1ENSG00000116489.84002.895506033.88040-0.592007.421105.83010K562TIAL1
CAPZA1ENSG00000116489.84997.182906410.18950-0.359303.848302.69670K562TRIM56
CAPZA1ENSG00000116489.89777.148608440.604600.212002.185101.47100K562U2AF2
CAPZA1ENSG00000116489.813568.5221019119.58130-0.494808.503806.20150K562UBE2L3
CAPZA1ENSG00000116489.88112.259409504.78490-0.228604.357903.47590K562UPF1
CAPZA1ENSG00000116489.86444.291408132.96530-0.335804.161403.08150K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAPZA1 is not available on ENCORE database.





4 RBPs can affect the splicing of CAPZA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECAPZA1ENSG00000116489.8chr1+113196219113196366113191886113192091113197086113197293-0.069000.000000.00000excludedK562AQR
SECAPZA1ENSG00000116489.8chr1+113192039113192091113162453113162505113196219113196283-0.069000.000000.00028excludedK562SUPV3L1
MXECAPZA1ENSG00000116489.8chr1+1131962191131962831131970861131972931131920391131920911132016431132017230.089000.001740.055121includedK562TAF15
MXECAPZA1ENSG00000116489.8chr1+1131920391131920911131962191131962831131898311131898951131970861131972930.110000.003340.049401includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CAPZA1 is not avaliable on ENCORE database.