AGPAT3

General Information

Gene Name : AGPAT3
Gene ID : ENSG00000160216.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AGPAT3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AGPAT3	ENSG00000160216.18	11.99	19.50	15.75	ENCSR000AEF
HepG2	AGPAT3	ENSG00000160216.18	43.38	21.48	32.43	ENCSR985KAT
K562	AGPAT3	ENSG00000160216.18	34.97	22.34	28.66	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AGPAT3 is not avaliable on ENCORE database.

Proteins bound to RNA

AGPAT3 RNA is bound by 61 proteins.

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eCLIP assay for AGPAT3 is not avaliable on ENCORE database.

61 proteins are bound to AGPAT3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	45354795	45354893	+	intron-Distal	5.90383	42.75504	K562	AGGF1
chr21	45296180	45296254	+	intron-Distal	5.71259	38.51075	HepG2	QKI
chr21	45304531	45304701	+	intron-Distal	4.75207	36.81910	HepG2	RBFOX2
chr21	45394607	45394707	+	intron-Distal	6.48711	36.56118	K562	EIF4G2
chr21	45379511	45379595	+	3'-UTR,5'-UTR,CDS,intron-Proximal	5.28193	35.67911	HepG2	DDX3X
chr21	45296095	45296176	+	intron-Distal	7.39923	35.08218	K562	QKI
chr21	45340140	45340265	+	intron-Distal	5.86258	33.64661	K562	EIF4G2
chr21	45379080	45379249	+	intron-Distal	5.82507	28.40348	K562	EIF4G2
chr21	45395235	45395347	+	intron-Distal	7.10842	27.43779	K562	EIF4G2
chr21	45285112	45285178	+	5'-UTR	4.57582	27.00263	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 414 entries

eCLIP assay for AGPAT3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AGPAT3 is not available on ENCORE database.
121 RBPs can affect the levels of AGPAT3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AGPAT3 is not available on ENCORE database.

121 RBPs can affect the gene expression of AGPAT3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AGPAT3	ENSG00000160216.14	4112.14820	2037.28100	1.01310	50.54190	49.02230	HepG2	SSB
AGPAT3	ENSG00000160216.14	2652.60540	811.53730	1.70860	31.11230	29.76340	HepG2	TIAL1
AGPAT3	ENSG00000160216.14	2693.18550	1714.43550	0.65150	17.45490	16.32050	HepG2	NELFE
AGPAT3	ENSG00000160216.14	2207.48910	1443.45730	0.61280	17.63860	15.96010	HepG2	DDX19B
AGPAT3	ENSG00000160216.14	2419.88980	1589.76500	0.60600	17.01740	15.72110	HepG2	PUS1
AGPAT3	ENSG00000160216.14	2342.89530	1493.23410	0.64980	16.51630	15.16560	HepG2	DKC1
AGPAT3	ENSG00000160216.14	2184.40930	1242.93170	0.81340	16.66350	15.09890	K562	PTBP1
AGPAT3	ENSG00000160216.14	1892.18830	1028.40500	0.87950	15.67510	14.21850	HepG2	DDX21
AGPAT3	ENSG00000160216.14	1893.31680	1257.60060	0.59010	15.37910	13.96890	HepG2	SLBP
AGPAT3	ENSG00000160216.14	2020.88750	1392.29910	0.53740	14.38820	13.25720	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 136 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AGPAT3 is not available on ENCORE database.

9 RBPs can affect the splicing of AGPAT3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387996	0.20100	0.00002	0.00114	included	HepG2	HNRNPK
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387958	-0.10900	0.00002	0.00049	excluded	K562	PUS1
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387958	0.12000	0.00006	0.00441	included	K562	FXR1
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387958	0.14600	0.00060	0.01262	included	K562	HNRNPC
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387958	-0.09500	0.00065	0.01974	excluded	K562	RBM15
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387958	-0.08500	0.00125	0.03756	excluded	K562	AKAP8L
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379669	45379740	45387826	45387996	-0.15100	0.00308	0.03587	excluded	HepG2	U2AF2
MXE	AGPAT3	ENSG00000160216.14	chr21	+	45379514	45379628	45387826	45387996	45323837	45323900	45388998	45389160	0.09100	0.00386	0.06296	1included	K562	PRPF8
SE	AGPAT3	ENSG00000160216.14	chr21	+	45380512	45380660			45379663	45379740	45387826	45387996	0.07700	0.00757	0.06520	included	K562	AQR

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AGPAT3

General Information

Functions

Localization

Domains (AlphaFold: AGPAT3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AGPAT3 is not avaliable on ENCORE database.

61 proteins are bound to AGPAT3 RNA:

eCLIP assay for AGPAT3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AGPAT3 is not available on ENCORE database.

121 RBPs can affect the gene expression of AGPAT3 :

The Knockdown/knockout RNA-Seq assay for AGPAT3 is not available on ENCORE database.

9 RBPs can affect the splicing of AGPAT3 :

The Knockdown/knockout RNA-Seq assay for AGPAT3 is not avaliable on ENCORE database.