XKR3

General Information

Gene Name : XKR3
Gene ID : ENSG00000172967.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: XKR3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	XKR3	ENSG00000172967.7	0.00	0.02	0.01	ENCSR000AEF
HepG2	XKR3	ENSG00000172967.7	0.00	0.00	0.00	ENCSR985KAT
K562	XKR3	ENSG00000172967.7	5.02	4.78	4.90	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for XKR3 is not avaliable on ENCORE database.

Proteins bound to RNA

XKR3 RNA is bound by 21 proteins.

eCLIP assay for XKR3 is not avaliable on ENCORE database.

21 proteins are bound to XKR3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	17288839	17288968	-	5'-UTR,CDS,intron-Distal	3.11631	5.18552	K562	SRSF1
chr22	17265227	17265308	-	CDS,intron-Distal	3.80817	7.45960	K562	U2AF2
chr22	17288801	17288874	-	CDS,intron-Distal	4.61269	5.17013	K562	RBM15
chr22	17295971	17295991	-	intron-Distal	4.30335	4.27660	K562	HNRNPL
chr22	17276806	17276826	-	intron-Distal	6.81142	77.87162	K562	EXOSC5
chr22	17275928	17275950	-	intron-Distal	3.40379	7.66059	K562	EXOSC5
chr22	17269802	17269900	-	intron-Distal	5.43776	44.78285	K562	KHSRP
chr22	17287514	17287570	-	intron-Distal	4.65145	21.16377	K562	UPF1
chr22	17276826	17276847	-	intron-Distal	6.45801	79.69376	K562	EXOSC5
chr22	17275724	17275786	-	intron-Distal	7.27574	35.84448	K562	EXOSC5
chr22	17265492	17265512	-	intron-Distal	5.60994	26.92280	K562	KHSRP
chr22	17276926	17276974	-	intron-Distal	4.66465	4.78076	K562	HNRNPM
chr22	17277280	17277326	-	intron-Distal	5.14726	8.94038	K562	HNRNPM
chr22	17286556	17286587	-	intron-Distal	4.33794	19.72649	K562	KHSRP
chr22	17275510	17275576	-	intron-Distal	4.98356	28.90008	K562	EXOSC5
chr22	17276642	17276676	-	intron-Distal	3.86490	10.30382	K562	EXOSC5
chr22	17298591	17298640	-	intron-Distal	3.15317	3.70253	K562	KHDRBS1
chr22	17275086	17275110	-	intron-Distal	4.55345	4.78076	K562	HNRNPM
chr22	17277344	17277384	-	intron-Distal	4.73104	13.98128	K562	EXOSC5
chr22	17275624	17275634	-	intron-Distal	4.57577	9.69330	K562	EXOSC5
chr22	17277429	17277457	-	intron-Distal	6.30863	39.37904	K562	EXOSC5
chr22	17286482	17286586	-	intron-Distal	3.37228	5.28411	K562	CPEB4
chr22	17286765	17286815	-	intron-Distal	5.27936	11.02923	K562	TIA1
chr22	17265429	17265506	-	intron-Distal	4.08966	6.70492	K562	RBFOX2
chr22	17277707	17277758	-	intron-Distal	4.71819	23.08228	K562	EXOSC5
chr22	17286476	17286534	-	intron-Distal	3.01731	5.39249	K562	DDX6
chr22	17286503	17286531	-	intron-Distal	3.21104	6.92668	K562	KHSRP
chr22	17283240	17283297	-	intron-Distal	3.56886	9.35533	K562	PTBP1
chr22	17269701	17269747	-	intron-Distal	4.86093	6.08869	K562	EXOSC5
chr22	17277188	17277280	-	intron-Distal	5.47036	30.79067	K562	HNRNPM
chr22	17275266	17275318	-	intron-Distal	3.11703	3.09339	K562	MATR3
chr22	17276070	17276116	-	intron-Distal	5.66411	11.55909	K562	HNRNPM
chr22	17269740	17269772	-	intron-Distal	5.02559	31.23728	K562	KHSRP
chr22	17276477	17276517	-	intron-Distal	4.12202	16.61751	K562	EXOSC5
chr22	17277283	17277335	-	intron-Distal	5.34103	29.41142	K562	EXOSC5
chr22	17276426	17276468	-	intron-Distal	6.69945	22.01998	K562	EXOSC5
chr22	17275639	17275715	-	intron-Distal	5.17363	15.22519	K562	HNRNPM
chr22	17275953	17275986	-	intron-Distal	4.94121	6.09831	K562	HNRNPM
chr22	17277827	17277858	-	intron-Distal	4.62655	21.87002	K562	EXOSC5
chr22	17270599	17270745	-	intron-Distal	4.32217	3.79026	K562	HNRNPM
chr22	17267096	17267163	-	intron-Distal	4.11619	3.88340	K562	TARDBP
chr22	17275033	17275078	-	intron-Distal	5.98760	27.35239	K562	EXOSC5
chr22	17268891	17268959	-	intron-Distal	5.93622	31.89022	K562	KHSRP
chr22	17276387	17276407	-	intron-Distal	5.99744	15.31952	K562	EXOSC5
chr22	17295991	17296038	-	intron-Distal	3.96531	6.46071	K562	HNRNPL
chr22	17277397	17277429	-	intron-Distal	7.09962	36.18271	K562	EXOSC5
chr22	17268787	17268891	-	intron-Distal	3.88714	19.16622	K562	KHSRP
chr22	17286129	17286155	-	intron-Distal	3.49368	10.46730	K562	KHSRP
chr22	17270024	17270078	-	intron-Distal	3.86638	3.45860	K562	TIA1
chr22	17275265	17275279	-	intron-Distal	6.03550	33.35378	K562	EXOSC5
chr22	17265438	17265492	-	intron-Distal	4.92114	32.02132	K562	KHSRP
chr22	17286155	17286209	-	intron-Distal	4.12962	23.56936	K562	KHSRP
chr22	17276902	17276952	-	intron-Distal	4.58392	19.42973	K562	EXOSC5
chr22	17272240	17272273	-	intron-Distal	4.92828	5.39854	K562	PTBP1
chr22	17286361	17286426	-	intron-Distal	4.14003	23.54044	K562	KHSRP
chr22	17279021	17279071	-	intron-Distal	4.17754	3.01456	K562	EXOSC5
chr22	17265578	17265592	-	intron-Distal	4.19906	8.17387	K562	KHSRP
chr22	17268633	17268671	-	intron-Distal	3.25930	9.83419	K562	KHSRP
chr22	17283932	17283975	-	intron-Distal	4.03279	4.13936	K562	PUM2
chr22	17286909	17286989	-	intron-Distal	3.67765	29.70021	K562	UPF1
chr22	17275279	17275315	-	intron-Distal	5.68775	48.32245	K562	EXOSC5
chr22	17274850	17274886	-	intron-Distal	6.80631	28.75456	K562	EXOSC5
chr22	17277457	17277478	-	intron-Distal	5.32702	19.73630	K562	EXOSC5
chr22	17288564	17288606	-	intron-Distal,intron-Proximal	3.54813	6.55643	K562	TIA1
chr22	17269663	17269767	-	intron-Distal	3.95339	3.01017	K562	CPSF6
chr22	17286237	17286307	-	intron-Distal	3.74659	24.50855	K562	KHSRP
chr22	17276796	17276806	-	intron-Distal	5.90235	14.65468	K562	EXOSC5
chr22	17269046	17269111	-	intron-Distal	4.50099	14.39426	K562	KHSRP
chr22	17275867	17275905	-	intron-Distal	5.36154	29.41541	K562	EXOSC5
chr22	17287399	17287479	-	intron-Distal	3.11464	3.61796	K562	FAM120A
chr22	17277433	17277455	-	intron-Distal	3.96724	8.23617	K562	HNRNPM
chr22	17276067	17276118	-	intron-Distal	5.16837	32.28764	K562	EXOSC5
chr22	17269670	17269740	-	intron-Distal	5.13552	32.02701	K562	KHSRP
chr22	17276010	17276067	-	intron-Distal	5.51145	39.72273	K562	EXOSC5
chr22	17286619	17286669	-	intron-Distal	4.18298	37.33645	K562	KHSRP
chr22	17275602	17275624	-	intron-Distal	4.74398	11.25776	K562	EXOSC5
chr22	17275821	17275867	-	intron-Distal	6.73148	54.51731	K562	EXOSC5
chr22	17275483	17275572	-	intron-Distal	5.22765	18.56769	K562	HNRNPM
chr22	17286081	17286089	-	intron-Distal	3.34607	5.83938	K562	KHSRP
chr22	17286601	17286658	-	intron-Distal	3.48265	4.55729	K562	TIA1
chr22	17265515	17265539	-	intron-Distal	3.53809	7.08481	K562	KHSRP
chr22	17272531	17272651	-	intron-Distal	4.71072	24.01054	K562	PTBP1
chr22	17276365	17276387	-	intron-Distal	5.24973	16.45282	K562	EXOSC5
chr22	17286587	17286619	-	intron-Distal	4.56549	27.32801	K562	KHSRP
chr22	17265539	17265578	-	intron-Distal	3.87088	12.29548	K562	KHSRP
chr22	17287390	17287486	-	intron-Distal	5.15853	35.44568	K562	UPF1
chr22	17275265	17275305	-	intron-Distal	3.67583	7.31566	K562	HNRNPM
chr22	17287534	17287633	-	intron-Distal	4.17696	14.88944	K562	TIA1
chr22	17284913	17284943	-	intron-Distal	3.16365	7.81851	K562	KHSRP
chr22	17286674	17286720	-	intron-Distal	3.16181	3.40427	K562	U2AF1
chr22	17269900	17269960	-	intron-Distal	3.71623	18.02581	K562	KHSRP
chr22	17284882	17284913	-	intron-Distal	3.59732	8.77805	K562	KHSRP
chr22	17268959	17269029	-	intron-Distal	4.69629	23.19205	K562	KHSRP
chr22	17276174	17276208	-	intron-Distal	4.51771	20.03866	K562	EXOSC5
chr22	17286307	17286329	-	intron-Distal	3.70487	14.28139	K562	KHSRP
chr22	17265340	17265390	-	intron-Distal	4.06255	7.34371	K562	KHSRP
chr22	17277639	17277673	-	intron-Distal	3.83001	13.78031	K562	EXOSC5
chr22	17287570	17287590	-	intron-Distal	3.32414	12.36183	K562	UPF1
chr22	17277390	17277433	-	intron-Distal	4.87163	14.43885	K562	HNRNPM
chr22	17276848	17276864	-	intron-Distal	4.96046	29.94769	K562	EXOSC5
chr22	17275654	17275702	-	intron-Distal	5.58201	23.37276	K562	EXOSC5
chr22	17276528	17276555	-	intron-Distal	3.91112	16.57117	K562	EXOSC5
chr22	17286473	17286529	-	intron-Distal	3.23230	7.87749	K562	ZC3H11A
chr22	17269546	17269605	-	intron-Distal	3.58328	9.16313	K562	KHSRP
chr22	17271266	17271323	-	intron-Distal	3.80311	5.83959	K562	KHSRP
chr22	17286464	17286503	-	intron-Distal	3.38396	7.47569	K562	KHSRP
chr22	17269772	17269802	-	intron-Distal	4.43103	15.48132	K562	KHSRP
chr22	17286329	17286361	-	intron-Distal	4.12496	16.11516	K562	KHSRP
chr22	17274946	17274994	-	intron-Distal	5.31593	25.79734	K562	EXOSC5
chr22	17276299	17276339	-	intron-Distal	4.61054	14.87928	K562	EXOSC5
chr22	17267799	17267852	-	intron-Distal	3.23517	3.11628	K562	KHSRP
chr22	17277240	17277272	-	intron-Distal	5.49004	17.10772	K562	EXOSC5
chr22	17287694	17287734	-	intron-Distal	3.39927	4.23616	K562	TIA1
chr22	17276994	17277033	-	intron-Distal	4.36461	3.78162	K562	HNRNPM
chr22	17277081	17277115	-	intron-Distal	5.62143	22.71068	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for XKR3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for XKR3 is not available on ENCORE database.
24 RBPs can affect the levels of XKR3.

The Knockdown/knockout RNA-Seq assay for XKR3 is not available on ENCORE database.

24 RBPs can affect the gene expression of XKR3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
XKR3	ENSG00000172967.7	1226.83570	441.49120	1.47440	29.20260	27.50270	K562	AQR
XKR3	ENSG00000172967.7	498.00270	389.87470	0.35300	2.45650	1.59980	K562	ATP5C1
XKR3	ENSG00000172967.7	540.86900	716.15550	-0.40500	2.34110	1.61350	K562	CPSF6
XKR3	ENSG00000172967.7	174.77020	264.90620	-0.60000	3.27750	2.13370	K562	DDX3X
XKR3	ENSG00000172967.7	247.68880	343.50270	-0.47180	2.57310	1.87490	K562	EIF2S2
XKR3	ENSG00000172967.7	446.52280	276.76770	0.69000	5.54420	4.38670	K562	EIF4A3
XKR3	ENSG00000172967.7	287.89170	593.48100	-1.04370	3.71460	2.72180	K562	FIP1L1
XKR3	ENSG00000172967.7	338.26360	247.07050	0.45310	2.47680	1.46090	K562	HNRNPA1
XKR3	ENSG00000172967.7	516.62710	657.56020	-0.34800	2.26000	1.31410	K562	HNRNPL
XKR3	ENSG00000172967.7	408.92140	804.73890	-0.97670	3.29090	2.42560	K562	HSPD1
XKR3	ENSG00000172967.7	549.79730	394.31200	0.47950	3.48120	2.54400	K562	KIF1C
XKR3	ENSG00000172967.7	574.50140	441.73140	0.37900	2.46310	1.61330	K562	MBNL1
XKR3	ENSG00000172967.7	448.89710	667.43480	-0.57220	4.17820	3.08860	K562	METAP2
XKR3	ENSG00000172967.7	507.00870	309.62310	0.71140	4.38090	3.19280	K562	NAA15
XKR3	ENSG00000172967.7	846.94160	615.19810	0.46110	3.62190	1.89630	K562	NOL12
XKR3	ENSG00000172967.7	441.99600	541.17090	-0.29210	2.04170	1.38930	K562	NSUN2
XKR3	ENSG00000172967.7	354.33360	673.61060	-0.92680	3.15810	2.27320	K562	PPIG
XKR3	ENSG00000172967.7	1141.50840	657.92030	0.79490	5.08910	2.64770	K562	PPIL4
XKR3	ENSG00000172967.7	926.02720	613.68610	0.59350	6.03780	4.83510	K562	PUF60
XKR3	ENSG00000172967.7	570.58180	368.46210	0.63080	4.55400	3.88080	K562	PUS1
XKR3	ENSG00000172967.7	1078.12120	692.07670	0.63940	3.59830	1.58830	K562	SMN1
XKR3	ENSG00000172967.7	481.58500	302.15370	0.67240	4.38620	2.14240	K562	TRNAU1AP
XKR3	ENSG00000172967.7	510.73460	301.75300	0.75910	5.65850	3.97370	K562	U2AF1
XKR3	ENSG00000172967.7	451.83200	311.66670	0.53570	4.00610	3.04190	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for XKR3 is not available on ENCORE database.

1 RBPs can affect the splicing of XKR3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	XKR3	ENSG00000172967.7	chr22	-	17280660	17280914			17264301	17265299	17288628	17288973	-0.44000	0.00004	0.00080	excluded	K562	AQR
A5SS	XKR3	ENSG00000172967.7	chr22	-	17288628	17288973			17288827	17288973	17264301	17265299	0.71600	0.00061	0.01222	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

XKR3

General Information

Functions

Localization

Domains (AlphaFold: XKR3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for XKR3 is not avaliable on ENCORE database.

21 proteins are bound to XKR3 RNA:

eCLIP assay for XKR3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for XKR3 is not available on ENCORE database.

24 RBPs can affect the gene expression of XKR3 :

The Knockdown/knockout RNA-Seq assay for XKR3 is not available on ENCORE database.

1 RBPs can affect the splicing of XKR3 :

The Knockdown/knockout RNA-Seq assay for XKR3 is not avaliable on ENCORE database.