SNX29P2

General Information

Gene Name       : SNX29P2
Gene ID             : ENSG00000198106.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX29P2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX29P2ENSG00000198106.80.230.260.24ENCSR000AEF
HepG2SNX29P2ENSG00000198106.80.060.020.04ENCSR985KAT
K562SNX29P2ENSG00000198106.80.000.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX29P2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX29P2 RNA is bound by 11 proteins.  







eCLIP assay for SNX29P2 is not avaliable on ENCORE database.





11 proteins are bound to SNX29P2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162928169329281761+intron-Distal7.0303021.02575HepG2DKC1
chr162928194229281997+intron-Distal4.297604.61288HepG2PRPF4
chr162927927429279359+intron-Distal3.167684.90123HepG2CSTF2T
chr162928192529282019+intron-Distal4.119578.21449HepG2RBFOX2
chr162928170829281767+intron-Distal3.721046.10842HepG2CSTF2T
chr162928297329283021+intron-Distal3.151513.00221HepG2CSTF2T
chr162928195029282015+intron-Distal6.0241824.08765HepG2DKC1
chr162928192829282027+intron-Distal5.180448.77839HepG2IGF2BP1
chr162927985529279908+intron-Distal3.952936.48652HepG2CSTF2T
chr162927546829275555+intron-Distal4.640706.58841HepG2HNRNPK
chr162928254529282621+intron-Distal5.6489310.04448HepG2FAM120A
chr162929421229294304+intron-Distal4.565044.07628HepG2PTBP1
chr162928253729282620+intron-Distal3.789665.08364HepG2PRPF4
chr162928468729284835+intron-Distal5.8772816.78375HepG2DKC1
chr162928254229282622+intron-Distal3.010513.46494HepG2IGF2BP1
chr162928518029285272+intron-Distal6.379437.91709HepG2DKC1
chr162927555529275665+intron-Distal3.917977.07387HepG2HNRNPK
chr162928209629282208+intron-Distal4.785446.13324HepG2IGF2BP1
chr162928193729282022+intron-Distal4.1598011.87278HepG2FAM120A
chr162928238529282435+intron-Distal5.180458.89307HepG2DKC1
chr162928255429282627+intron-Distal5.164278.29600HepG2CSTF2T
chr162928373029283799+intron-Distal4.065623.16310HepG2CSTF2T
chr162927559529275670+intron-Distal3.787256.94360HepG2DDX59
chr162928253329282626+intron-Distal5.2926623.11439HepG2DKC1
chr162927555429275610+intron-Distal3.966587.33240HepG2PCBP2
chr162928238929282441+intron-Distal3.943053.31982HepG2IGF2BP1
chr162928253329282619+intron-Distal5.214953.72755K562EIF4G2
chr162928492029285018+intron-Distal6.5562513.49496HepG2DKC1
chr162928194929282017+intron-Distal3.562854.14880HepG2CSTF2T
chr162927550629275545+intron-Distal4.271193.39700HepG2PCBP2
chr162927561029275674+intron-Distal5.9823611.88842HepG2PCBP2
chr162927937929279451+intron-Distal3.447795.12571HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX29P2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX29P2 is not available on ENCORE database.

  • 31 RBPs can affect the levels of SNX29P2.  








The Knockdown/knockout RNA-Seq assay for SNX29P2 is not available on ENCORE database.





31 RBPs can affect the gene expression of SNX29P2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX29P2ENSG00000198106.710.5245031.94630-1.601902.231801.53220HepG2CIRBP
SNX29P2ENSG00000198106.722.3485065.70750-1.555903.783902.88310HepG2CNOT7
SNX29P2ENSG00000198106.78.3573034.05870-2.026903.426202.67780HepG2DDX21
SNX29P2ENSG00000198106.747.2905017.328901.448302.357801.63710HepG2DDX55
SNX29P2ENSG00000198106.725.7861062.76850-1.283403.362302.44170HepG2EWSR1
SNX29P2ENSG00000198106.777.1411029.827201.370802.411601.46990HepG2FTO
SNX29P2ENSG00000271699.110.279000.638904.007802.196001.48810HepG2FUBP3
SNX29P2ENSG00000198106.776.9698033.253301.210701.984801.41750HepG2G3BP1
SNX29P2ENSG00000271699.10.581509.10450-3.968802.190801.40000HepG2GEMIN5
SNX29P2ENSG00000271699.116.801303.499402.263301.873201.34570HepG2HNRNPLL
SNX29P2ENSG00000198106.749.5373025.020500.985301.996401.47170HepG2HNRNPU
SNX29P2ENSG00000198106.781.5039035.389001.203504.017503.15950HepG2IGF2BP1
SNX29P2ENSG00000198106.773.1290033.994901.105002.484501.54290HepG2KHSRP
SNX29P2ENSG00000198106.784.8596028.572601.570303.454902.61790HepG2NSUN2
SNX29P2ENSG00000198106.721.5994065.42270-1.598805.091404.30180HepG2PUS1
SNX29P2ENSG00000198106.787.3353028.228401.629303.215101.45570HepG2RBM39
SNX29P2ENSG00000198106.7135.2630038.708701.804903.900403.11240HepG2RPLP0
SNX29P2ENSG00000271699.135.061509.929201.820002.917002.21800HepG2RPLP0
SNX29P2ENSG00000198106.712.8213057.71280-2.170406.750605.66570HepG2SF3A3
SNX29P2ENSG00000198106.782.6728035.507801.219203.047802.22700HepG2SNRNP70
SNX29P2ENSG00000198106.7131.0442066.581900.976804.112903.53730HepG2SRFBP1
SNX29P2ENSG00000198106.7141.9652057.811101.296007.218306.46510HepG2SSB
SNX29P2ENSG00000198106.778.47860142.57990-0.861403.264801.87550HepG2SSRP1
SNX29P2ENSG00000198106.775.0184034.871901.105103.131402.54020HepG2TAF15
SNX29P2ENSG00000198106.757.74390140.04870-1.278204.197302.90320HepG2TBRG4
SNX29P2ENSG00000198106.785.1779024.319101.808306.872606.14920HepG2TIAL1
SNX29P2ENSG00000271699.120.518906.560101.645101.808501.38630HepG2TIAL1
SNX29P2ENSG00000198106.715.3423049.40800-1.687203.533002.82840HepG2U2AF1
SNX29P2ENSG00000198106.791.6085051.182400.839702.630401.94630HepG2UPF1
SNX29P2ENSG00000271699.118.430305.125501.846201.979601.37280HepG2UPF1
SNX29P2ENSG00000198106.715.7822049.41470-1.646603.382302.73170HepG2UTP3
SNX29P2ENSG00000198106.7120.2469034.957501.782209.700108.57120HepG2ZC3H8
SNX29P2ENSG00000198106.727.6443056.29090-1.025902.388901.86970HepG2ZNF622
SNX29P2ENSG00000198106.716.845002.456202.777702.323501.45780K562EIF4G2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX29P2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNX29P2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNX29P2 is not avaliable on ENCORE database.