RTBDN

General Information

Gene Name       : RTBDN
Gene ID             : ENSG00000132026.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RTBDN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RTBDNENSG00000132026.130.000.000.00ENCSR000AEF
HepG2RTBDNENSG00000132026.130.560.180.37ENCSR985KAT
K562RTBDNENSG00000132026.130.690.810.75ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RTBDN is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RTBDN RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RTBDN is not avaliable on ENCORE database.






NO known proteins are bound to RTBDN RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RTBDN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RTBDN is not available on ENCORE database.

  • 40 RBPs can affect the levels of RTBDN.  








The Knockdown/knockout RNA-Seq assay for RTBDN is not available on ENCORE database.





40 RBPs can affect the gene expression of RTBDN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RTBDNENSG00000132026.935.914504.713502.929604.972003.79790HepG2BCLAF1
RTBDNENSG00000132026.997.906209.797403.3208017.4481016.09030HepG2CKAP4
RTBDNENSG00000132026.9130.9181021.825102.5845013.4214012.14400HepG2DDX3X
RTBDNENSG00000132026.934.967805.329802.713804.072403.15350HepG2DDX55
RTBDNENSG00000132026.937.322702.488703.906506.947305.44110HepG2DDX59
RTBDNENSG00000132026.923.367104.666902.323803.094102.35470HepG2DNAJC21
RTBDNENSG00000132026.916.617604.623801.845501.860601.30670HepG2DNAJC2
RTBDNENSG00000132026.9153.1170018.022703.0866019.9841018.49000HepG2EIF2S1
RTBDNENSG00000132026.90.0000019.39820-99999.999995.162604.24230HepG2EIF4B
RTBDNENSG00000132026.971.192108.293803.1015012.1159010.48890HepG2EIF4G2
RTBDNENSG00000132026.974.030504.550304.0240013.0000010.84150HepG2FASTKD2
RTBDNENSG00000132026.968.800502.486304.7903014.6569013.29900HepG2GPKOW
RTBDNENSG00000132026.929.379505.240202.487003.360402.60280HepG2HNRNPC
RTBDNENSG00000132026.915.861304.068301.962902.038701.41630HepG2HNRNPF
RTBDNENSG00000132026.914.678302.372502.629102.066701.51430HepG2HNRNPLL
RTBDNENSG00000132026.925.994205.317402.289303.580602.75620HepG2ILF2
RTBDNENSG00000132026.961.134109.653202.662807.190505.20610HepG2KRR1
RTBDNENSG00000132026.933.349708.786101.924302.578201.79600HepG2MSI2
RTBDNENSG00000132026.930.546902.415903.660304.957703.63570HepG2MTPAP
RTBDNENSG00000132026.9127.8825020.699002.6271013.5227012.18880HepG2NCBP2
RTBDNENSG00000132026.950.497305.158803.291007.613804.98210HepG2PHF6
RTBDNENSG00000132026.919.872104.117602.270802.284001.54670HepG2PRPF8
RTBDNENSG00000132026.924.780508.303801.577302.166601.63040HepG2PUF60
RTBDNENSG00000132026.940.753709.973202.030702.138501.58010HepG2PUS1
RTBDNENSG00000132026.99.6918034.58300-1.835202.844102.29710HepG2NELFE
RTBDNENSG00000132026.99.6258032.34980-1.748802.632502.05320HepG2SF3B4
RTBDNENSG00000132026.936.568508.239702.149803.695601.85530HepG2SLTM
RTBDNENSG00000132026.93.5751033.76820-3.239605.456504.84900HepG2SRSF1
RTBDNENSG00000132026.918.183203.996102.185802.510901.84500HepG2SRSF7
RTBDNENSG00000132026.98.3464027.47400-1.718802.426101.90210HepG2SRSF9
RTBDNENSG00000132026.922.341706.393101.805002.383701.90020HepG2SSB
RTBDNENSG00000132026.964.864609.628102.752008.780806.67960HepG2SSRP1
RTBDNENSG00000132026.948.560107.249802.743706.037104.29450HepG2STAU1
RTBDNENSG00000132026.93.9738030.35780-2.933504.733104.03150HepG2TAF15
RTBDNENSG00000132026.925.738902.307903.479204.753703.83870HepG2TARDBP
RTBDNENSG00000132026.967.0654027.888701.265803.177302.28660HepG2TIA1
RTBDNENSG00000132026.968.3599013.229202.369308.675007.84540HepG2ZNF622
RTBDNENSG00000132026.962.1600031.903800.962202.385401.77860K562AKAP8L
RTBDNENSG00000132026.947.686304.824103.305107.813905.01060K562FASTKD2
RTBDNENSG00000132026.942.5266010.113902.071904.097703.38620K562HNRNPC
RTBDNENSG00000132026.947.0918013.977601.752303.667202.64960K562METAP2
RTBDNENSG00000132026.982.2176023.687801.795206.552904.56120K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RTBDN is not available on ENCORE database.





1 RBPs can affect the splicing of RTBDN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRTBDNENSG00000132026.9chr19-1293968212939842129396821293976712940624129408110.699000.000040.05099longerK562PUM2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RTBDN is not avaliable on ENCORE database.