RP4-559A3.7

General Information

Gene Name : RP4-559A3.7
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP4-559A3.7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP4-559A3.7 is not avaliable on ENCORE database.

Proteins bound to RNA

RP4-559A3.7 RNA is bound by 32 proteins.

eCLIP assay for RP4-559A3.7 is not avaliable on ENCORE database.

32 proteins are bound to RP4-559A3.7 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	226111879	226111950	-	5'-UTR,intron-Distal	3.52131	7.78729	K562	GEMIN5
chr1	226111787	226111855	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.13103	6.38429	K562	DROSHA
chr1	226111807	226111861	-	5'-UTR,CDS,intron-Distal	3.74909	14.91304	K562	RPS3
chr1	226111739	226111857	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.44058	4.02244	HepG2	NCBP2
chr1	226111807	226111927	-	5'-UTR,CDS,intron-Distal	3.77082	8.14916	K562	PCBP1
chr1	226111741	226111786	-	CDS,intron-Distal,intron-Proximal	3.07643	5.21025	HepG2	PPIG
chr1	226109899	226109977	-	CDS,intron-Distal,intron-Proximal	3.06483	7.16368	HepG2	PPIG
chr1	226109052	226109229	-	CDS,intron-Distal,intron-Proximal	3.78127	18.13480	K562	EFTUD2
chr1	226111753	226111807	-	CDS,intron-Distal,intron-Proximal	4.22247	9.79608	K562	RPS3
chr1	226111339	226111405	-	CDS,intron-Distal,intron-Proximal	3.29386	3.93112	K562	RBM15
chr1	226109208	226109253	-	CDS,intron-Distal,intron-Proximal	5.06961	17.02742	K562	AQR
chr1	226111433	226111489	-	CDS,intron-Distal,intron-Proximal	5.92058	48.07933	K562	AQR
chr1	226111424	226111570	-	CDS,intron-Distal,intron-Proximal	5.41389	8.16909	HepG2	AQR
chr1	226111415	226111438	-	CDS,intron-Distal	4.27105	20.91460	K562	YBX3
chr1	226109918	226110006	-	CDS,intron-Distal	4.22885	30.65807	K562	RPS3
chr1	226111357	226111435	-	CDS,intron-Distal,intron-Proximal	4.47523	17.37257	HepG2	PRPF8
chr1	226111405	226111414	-	CDS,intron-Distal	4.16379	19.73995	K562	YBX3
chr1	226111467	226111471	-	CDS,intron-Distal	3.56226	9.40778	K562	YBX3
chr1	226111744	226111787	-	CDS,intron-Distal,intron-Proximal	3.01619	13.57305	K562	DDX3X
chr1	226111739	226111745	-	CDS,intron-Distal,intron-Proximal	4.00006	12.23507	HepG2	PRPF8
chr1	226110043	226110143	-	CDS,intron-Distal,intron-Proximal	3.60443	3.39008	HepG2	AQR
chr1	226111348	226111420	-	CDS,intron-Distal,intron-Proximal	3.21014	4.90382	K562	DDX6
chr1	226111429	226111496	-	CDS,intron-Distal,intron-Proximal	3.82307	5.88049	HepG2	EFTUD2
chr1	226109039	226109126	-	CDS,intron-Distal,intron-Proximal	3.74735	10.35072	HepG2	BUD13
chr1	226109051	226109171	-	CDS,intron-Distal,intron-Proximal	4.95243	11.08778	HepG2	AQR
chr1	226110062	226110109	-	CDS,intron-Distal,intron-Proximal	3.65307	12.26379	K562	AQR
chr1	226111364	226111417	-	CDS,intron-Distal,intron-Proximal	4.62475	5.68078	HepG2	AQR
chr1	226108919	226108947	-	CDS,intron-Distal,intron-Proximal	3.15270	5.33443	K562	IGF2BP2
chr1	226111677	226111749	-	CDS,intron-Distal,intron-Proximal	5.60854	10.68826	HepG2	AQR
chr1	226109048	226109128	-	CDS,intron-Distal,intron-Proximal	4.05843	15.34537	K562	SF3B4
chr1	226109038	226109101	-	CDS,intron-Distal,intron-Proximal	4.20368	16.19797	K562	BUD13
chr1	226111455	226111467	-	CDS,intron-Distal	3.67500	10.50401	K562	YBX3
chr1	226109906	226110015	-	CDS,intron-Distal	4.20486	6.04229	K562	RBM15
chr1	226111743	226111747	-	CDS,intron-Distal,intron-Proximal	3.99386	14.57262	K562	YBX3
chr1	226111747	226111754	-	CDS,intron-Distal,intron-Proximal	3.17313	9.81901	K562	YBX3
chr1	226111754	226111764	-	CDS,intron-Distal,intron-Proximal	3.72088	18.36337	K562	YBX3
chr1	226111441	226111491	-	CDS,intron-Distal,intron-Proximal	3.14193	15.02844	K562	PRPF8
chr1	226111438	226111453	-	CDS,intron-Distal	3.90405	15.15144	K562	YBX3
chr1	226110071	226110164	-	CDS,intron-Distal,intron-Proximal	3.13276	3.33980	HepG2	SF3B4
chr1	226109039	226109116	-	CDS,intron-Distal,intron-Proximal	5.53212	31.35979	K562	AQR
chr1	226107663	226107718	-	3'-UTR,intron-Distal	3.56629	6.35062	K562	IGF2BP1
chr1	226111604	226111664	-	intron-Distal,intron-Proximal	5.38889	24.96343	K562	AQR
chr1	226107589	226107638	-	3'-UTR,intron-Distal	3.94321	8.84200	K562	PABPC4
chr1	226111739	226111744	-	intron-Distal,intron-Proximal	6.54463	71.31765	K562	AQR
chr1	226108030	226108100	-	3'-UTR,intron-Distal	3.85249	3.19668	HepG2	UPF1
chr1	226111664	226111688	-	intron-Distal,intron-Proximal	5.57707	19.62251	K562	AQR
chr1	226111682	226111685	-	intron-Distal,intron-Proximal	4.20403	3.32446	HepG2	PRPF8
chr1	226111599	226111653	-	intron-Distal,intron-Proximal	3.20030	4.05481	K562	BUD13
chr1	226107890	226108060	-	3'-UTR,intron-Distal	3.66823	5.99892	HepG2	LSM11
chr1	226110477	226110537	-	intron-Distal	4.50767	5.98323	K562	DROSHA
chr1	226107891	226108000	-	3'-UTR,intron-Distal	3.45598	12.53117	K562	PABPC4
chr1	226108032	226108067	-	3'-UTR,intron-Distal	3.69080	5.68843	K562	DDX6
chr1	226110092	226110172	-	intron-Distal,intron-Proximal	3.30561	3.64169	K562	XRN2
chr1	226111707	226111739	-	intron-Distal,intron-Proximal	6.05211	400.00000	K562	AQR
chr1	226107626	226107729	-	3'-UTR,intron-Distal	3.39418	4.11066	K562	NOLC1
chr1	226108214	226108269	-	CDS,intron-Distal	3.98952	5.24350	K562	PCBP1
chr1	226108031	226108094	-	3'-UTR,intron-Distal	3.73212	3.06617	K562	HNRNPK
chr1	226108292	226108364	-	CDS,intron-Distal	3.49211	5.75231	K562	AQR
chr1	226111599	226111662	-	intron-Distal,intron-Proximal	4.80004	12.24889	HepG2	PRPF8
chr1	226109074	226109136	-	intron-Distal,intron-Proximal	3.74947	4.60097	HepG2	EFTUD2
chr1	226109445	226109496	-	intron-Distal,intron-Proximal	4.79620	5.80866	K562	BUD13
chr1	226109214	226109249	-	intron-Distal,intron-Proximal	3.56438	3.88924	K562	PRPF8
chr1	226107710	226107780	-	3'-UTR,intron-Distal	5.81409	36.65816	K562	UPF1
chr1	226107609	226107710	-	3'-UTR,intron-Distal	3.98036	30.78893	K562	UPF1
chr1	226108043	226108150	-	3'-UTR,intron-Distal	3.03585	6.07255	K562	PCBP1
chr1	226107603	226107644	-	3'-UTR,intron-Distal	4.78491	71.61685	K562	PUM2
chr1	226109149	226109238	-	intron-Distal,intron-Proximal	3.41833	6.80457	K562	GPKOW
chr1	226110512	226110579	-	intron-Distal	3.65272	3.37821	K562	XRCC6
chr1	226107790	226107939	-	3'-UTR,intron-Distal	5.18818	8.19969	HepG2	UPF1
chr1	226109116	226109163	-	intron-Distal,intron-Proximal	4.79652	11.83800	K562	AQR
chr1	226111489	226111632	-	intron-Distal,intron-Proximal	3.02832	5.23694	K562	FUS
chr1	226107644	226107664	-	3'-UTR,intron-Distal	5.47071	400.00000	K562	PUM2
chr1	226109566	226109727	-	CDS,intron-Distal,intron-Proximal	4.01274	3.89619	HepG2	SRSF1
chr1	226109115	226109167	-	intron-Distal,intron-Proximal	3.82422	8.66868	K562	BUD13
chr1	226109074	226109138	-	intron-Distal,intron-Proximal	3.83302	3.20724	K562	SMNDC1
chr1	226109749	226109830	-	CDS,intron-Distal,intron-Proximal	4.94530	17.69310	K562	SF3B4
chr1	226109636	226109746	-	CDS,intron-Distal,intron-Proximal	3.41178	6.75249	K562	LIN28B
chr1	226108868	226108906	-	intron-Distal,intron-Proximal	5.47385	8.88118	K562	AQR
chr1	226111381	226111400	-	intron-Distal,intron-Proximal	5.27754	14.81877	K562	AQR
chr1	226111607	226111652	-	intron-Distal,intron-Proximal	3.86788	3.53160	K562	RBFOX2
chr1	226107886	226107980	-	3'-UTR,intron-Distal	3.92239	20.23183	K562	UPF1
chr1	226111706	226111736	-	intron-Distal,intron-Proximal	4.09194	4.32762	K562	GEMIN5
chr1	226107664	226107721	-	3'-UTR,intron-Distal	5.63798	400.00000	K562	PUM2
chr1	226108015	226108092	-	3'-UTR,intron-Distal	3.90801	10.66732	K562	PABPC4
chr1	226111353	226111381	-	intron-Distal,intron-Proximal	6.56359	20.63385	K562	AQR
chr1	226107607	226107663	-	3'-UTR,intron-Distal	4.19662	6.14589	K562	IGF2BP1
chr1	226107606	226107676	-	3'-UTR,intron-Distal	4.52677	7.36168	HepG2	SUB1
chr1	226107772	226107855	-	3'-UTR,intron-Distal	3.41276	24.25590	K562	DDX6
chr1	226111699	226111730	-	intron-Distal,intron-Proximal	3.60198	9.87196	K562	PRPF8
chr1	226107780	226107881	-	3'-UTR,intron-Distal	5.47487	61.66621	K562	UPF1
chr1	226111675	226111720	-	intron-Distal,intron-Proximal	3.22242	6.93851	K562	BUD13
chr1	226111690	226111726	-	intron-Distal,intron-Proximal	5.06804	20.50766	HepG2	PRPF8
chr1	226109707	226109745	-	CDS,intron-Distal,intron-Proximal	3.51793	4.13746	HepG2	PPIG
chr1	226109771	226109840	-	CDS,intron-Distal,intron-Proximal	3.43660	3.84691	HepG2	SF3B4
chr1	226111688	226111707	-	intron-Distal,intron-Proximal	6.27993	400.00000	K562	AQR
chr1	226108022	226108112	-	3'-UTR,intron-Distal	3.56434	9.04863	K562	IGF2BP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP4-559A3.7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP4-559A3.7 is not available on ENCORE database.
15 RBPs can affect the levels of RP4-559A3.7.

The Knockdown/knockout RNA-Seq assay for RP4-559A3.7 is not available on ENCORE database.

15 RBPs can affect the gene expression of RP4-559A3.7 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP4-559A3.7	ENSG00000255835.1	12.54790	0.00000	99999.99990	3.44790	2.76560	HepG2	DDX6
RP4-559A3.7	ENSG00000255835.1	9.41010	0.00000	99999.99990	2.53650	1.90680	HepG2	MAGOH
RP4-559A3.7	ENSG00000255835.1	16.63650	0.00000	99999.99990	4.34620	3.57250	HepG2	MATR3
RP4-559A3.7	ENSG00000255835.1	13.24460	1.12820	3.55320	1.92560	1.40410	HepG2	PCBP1
RP4-559A3.7	ENSG00000255835.1	18.19930	3.13130	2.53890	2.85710	2.28090	K562	AGGF1
RP4-559A3.7	ENSG00000255835.1	18.05790	3.25900	2.47000	2.89000	2.22200	K562	AKAP8L
RP4-559A3.7	ENSG00000255835.1	16.38240	0.61710	4.73040	4.00580	2.83490	K562	BCLAF1
RP4-559A3.7	ENSG00000255835.1	0.00000	9.52480	-99999.99999	2.83000	1.58600	K562	NCBP2
RP4-559A3.7	ENSG00000255835.1	10.38120	0.00000	99999.99990	3.38780	2.66160	K562	PTBP1
RP4-559A3.7	ENSG00000255835.1	34.31640	0.00000	99999.99990	10.40510	9.04900	K562	SRSF1
RP4-559A3.7	ENSG00000255835.1	10.97870	0.00000	99999.99990	2.46450	1.47880	K562	SRSF4
RP4-559A3.7	ENSG00000255835.1	9.76190	0.00000	99999.99990	2.72780	1.68810	K562	SRSF5
RP4-559A3.7	ENSG00000255835.1	6.98660	0.00000	99999.99990	2.12740	1.50220	K562	TARDBP
RP4-559A3.7	ENSG00000255835.1	12.88200	0.00000	99999.99990	2.19570	1.47360	K562	TIA1
RP4-559A3.7	ENSG00000255835.1	49.13350	19.47840	1.33470	3.01210	2.10650	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP4-559A3.7 is not available on ENCORE database.

7 RBPs can affect the splicing of RP4-559A3.7 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RP4-559A3.7	ENSG00000255835.1	chr1	-	226111400	226111589			226111400	226111471	226111743	226111978	0.15700	0.00000	0.00000	longer	K562	AQR
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	0.15000	0.00077	0.03077	1included	HepG2	TAF15
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	-0.58800	0.00017	0.00410	2included	HepG2	SFPQ
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	-0.45500	0.00988	0.05322	2included	HepG2	U2AF2
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	0.12600	0.00043	0.04365	1included	K562	AARS
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	-0.09500	0.00139	0.07536	2included	K562	TRA2A
MXE	RP4-559A3.7	ENSG00000255835.1	chr1	-	226109251	226109344	226109557	226109779	226108907	226109071	226109903	226110083	0.23500	0.00029	0.01444	1included	K562	DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP4-559A3.7

General Information

Functions

Localization

Domains (AlphaFold: RP4-559A3.7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP4-559A3.7 is not avaliable on ENCORE database.

32 proteins are bound to RP4-559A3.7 RNA:

eCLIP assay for RP4-559A3.7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP4-559A3.7 is not available on ENCORE database.

15 RBPs can affect the gene expression of RP4-559A3.7 :

The Knockdown/knockout RNA-Seq assay for RP4-559A3.7 is not available on ENCORE database.

7 RBPs can affect the splicing of RP4-559A3.7 :

The Knockdown/knockout RNA-Seq assay for RP4-559A3.7 is not avaliable on ENCORE database.