RP3-449O17.1

General Information

Gene Name : RP3-449O17.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP3-449O17.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP3-449O17.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP3-449O17.1 RNA is bound by 10 proteins.

eCLIP assay for RP3-449O17.1 is not avaliable on ENCORE database.

10 proteins are bound to RP3-449O17.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	38767830	38767959	-	intron-Distal	3.03163	3.40713	K562	HNRNPL
chr22	38770109	38770167	-	intron-Distal	4.00921	3.86679	K562	SAFB2
chr22	38793956	38794052	-	intron-Distal	3.07454	4.13791	K562	CSTF2T
chr22	38776220	38776299	-	intron-Distal,intron-Proximal	4.29894	13.27493	K562	HNRNPL
chr22	38754110	38754186	-	intron-Distal	3.26001	3.08145	HepG2	HLTF
chr22	38772066	38772132	-	intron-Distal	3.93044	3.65589	K562	SAFB2
chr22	38776218	38776255	-	intron-Distal	3.92859	8.73821	HepG2	HNRNPL
chr22	38773221	38773330	-	intron-Distal	3.60962	5.34807	K562	ILF3
chr22	38767859	38767960	-	intron-Distal	3.53648	7.15670	HepG2	HNRNPL
chr22	38793842	38793928	-	intron-Distal	3.33565	3.46580	HepG2	CSTF2T
chr22	38778797	38778928	-	intron-Distal	3.42145	4.70733	K562	HNRNPL
chr22	38794789	38794882	-	intron-Distal,intron-Proximal	4.55276	5.32122	HepG2	NCBP2
chr22	38771561	38771646	-	intron-Distal	4.30524	9.15019	K562	SAFB2
chr22	38793954	38794015	-	intron-Distal	4.38332	5.40320	K562	NONO
chr22	38793322	38793395	-	intron-Distal	3.63783	5.85006	K562	NONO
chr22	38776218	38776293	-	intron-Distal,intron-Proximal	4.42792	13.67874	K562	AGGF1
chr22	38787130	38787249	-	intron-Distal	3.50333	4.56666	K562	HNRNPM
chr22	38766459	38766536	-	intron-Distal	4.44223	5.16344	K562	SAFB2
chr22	38757342	38757386	-	intron-Distal,intron-Proximal	3.81406	3.07706	HepG2	TIAL1
chr22	38776810	38776866	-	intron-Distal,intron-Proximal	3.22141	3.02891	HepG2	HNRNPL
chr22	38771574	38771637	-	intron-Distal	3.93650	3.24150	HepG2	HLTF
chr22	38770547	38770642	-	intron-Distal	3.18773	3.26524	K562	SAFB2
chr22	38765998	38766060	-	intron-Distal,intron-Proximal	3.10242	3.67498	K562	SAFB2
chr22	38779874	38779974	-	intron-Distal	3.44095	6.14017	HepG2	HNRNPL
chr22	38776255	38776307	-	intron-Distal,intron-Proximal	3.55908	8.55644	HepG2	HNRNPL
chr22	38771646	38771732	-	intron-Distal	4.53366	6.47232	K562	SAFB2
chr22	38761355	38761409	-	intron-Distal	4.28813	3.27946	HepG2	HNRNPM
chr22	38766894	38766956	-	intron-Distal	4.25395	5.13876	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP3-449O17.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP3-449O17.1 is not available on ENCORE database.
32 RBPs can affect the levels of RP3-449O17.1.

The Knockdown/knockout RNA-Seq assay for RP3-449O17.1 is not available on ENCORE database.

32 RBPs can affect the gene expression of RP3-449O17.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP3-449O17.1	ENSG00000244627.1	18.28410	40.90970	-1.16190	1.89400	1.39060	HepG2	BOP1
RP3-449O17.1	ENSG00000244627.1	78.86520	21.91780	1.84720	5.78810	4.94860	HepG2	EIF2S1
RP3-449O17.1	ENSG00000244627.1	44.57050	78.75660	-0.82130	2.14050	1.38840	HepG2	EIF4G1
RP3-449O17.1	ENSG00000244627.1	63.06460	22.67130	1.47590	3.78820	3.01400	HepG2	G3BP1
RP3-449O17.1	ENSG00000244627.1	57.95720	22.96730	1.33530	2.76860	2.07110	HepG2	HNRNPK
RP3-449O17.1	ENSG00000244627.1	61.28530	21.63160	1.50230	2.26260	1.38030	HepG2	IGF2BP3
RP3-449O17.1	ENSG00000244627.1	18.71450	51.25170	-1.45340	2.54230	1.86610	HepG2	RAVER1
RP3-449O17.1	ENSG00000244627.1	58.05930	24.78810	1.22780	2.58600	2.05970	HepG2	NELFE
RP3-449O17.1	ENSG00000244627.1	56.93760	21.75550	1.38790	3.23900	2.63910	HepG2	TAF15
RP3-449O17.1	ENSG00000244627.1	40.07880	81.65820	-1.02680	2.29660	1.32510	HepG2	TBRG4
RP3-449O17.1	ENSG00000244627.1	30.89200	71.13890	-1.20340	3.22010	2.02610	HepG2	XPO5
RP3-449O17.1	ENSG00000244627.1	109.35060	223.74180	-1.03290	6.67860	5.85230	K562	AGGF1
RP3-449O17.1	ENSG00000244627.1	154.82490	245.85410	-0.66720	3.50860	2.36860	K562	AKAP8
RP3-449O17.1	ENSG00000244627.1	101.48690	232.81240	-1.19790	8.17830	6.99500	K562	AKAP8L
RP3-449O17.1	ENSG00000244627.1	109.07430	184.60320	-0.75910	2.57720	2.00620	K562	AQR
RP3-449O17.1	ENSG00000244627.1	170.13370	244.27420	-0.52180	2.60190	1.71840	K562	ATP5C1
RP3-449O17.1	ENSG00000244627.1	184.04360	267.38710	-0.53890	2.80770	1.62200	K562	CCDC124
RP3-449O17.1	ENSG00000244627.1	100.92200	173.87430	-0.78480	3.83190	3.08290	K562	DDX47
RP3-449O17.1	ENSG00000244627.1	153.14780	250.52950	-0.71010	4.30720	3.18170	K562	DKC1
RP3-449O17.1	ENSG00000244627.1	52.19870	88.31560	-0.75870	2.06230	1.36740	K562	EIF3G
RP3-449O17.1	ENSG00000244627.1	170.57350	247.07590	-0.53460	2.32830	1.58060	K562	KIF1C
RP3-449O17.1	ENSG00000244627.1	153.99180	236.50940	-0.61900	2.85110	1.75590	K562	MAK16
RP3-449O17.1	ENSG00000244627.1	143.20160	276.78690	-0.95070	6.25460	4.78190	K562	MBNL1
RP3-449O17.1	ENSG00000244627.1	87.04490	194.00720	-1.15630	5.16280	3.82790	K562	NAA15
RP3-449O17.1	ENSG00000244627.1	21.55220	75.18930	-1.80270	5.28360	4.24660	K562	PRPF8
RP3-449O17.1	ENSG00000244627.1	132.17730	230.89360	-0.80480	3.75840	3.13920	K562	PUS1
RP3-449O17.1	ENSG00000244627.1	104.71350	224.96480	-1.10330	7.27310	6.34260	K562	RBM15
RP3-449O17.1	ENSG00000244627.1	27.41400	76.58320	-1.48210	4.15180	3.15000	K562	RPS19
RP3-449O17.1	ENSG00000244627.1	36.81230	101.02570	-1.45650	6.21140	4.89250	K562	SF3B4
RP3-449O17.1	ENSG00000244627.1	37.77630	93.49810	-1.30750	4.76870	3.68460	K562	SYNCRIP
RP3-449O17.1	ENSG00000244627.1	41.52130	97.24910	-1.22780	4.59310	3.56530	K562	U2AF2
RP3-449O17.1	ENSG00000244627.1	127.71320	234.09440	-0.87420	3.37460	1.89530	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP3-449O17.1 is not available on ENCORE database.

3 RBPs can affect the splicing of RP3-449O17.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP3-449O17.1	ENSG00000244627.1	chr22	-	38765990	38766050	38757403	38757565	38776374	38776428	0.37000	0.00006	0.00306	included	K562	RBM15
SE	RP3-449O17.1	ENSG00000244627.1	chr22	-	38765990	38766050	38757403	38757565	38776374	38776428	-0.44500	0.00031	0.01625	excluded	K562	PTBP1
SE	RP3-449O17.1	ENSG00000244627.1	chr22	-	38765990	38766050	38757403	38757565	38776374	38776428	0.35400	0.00238	0.03916	included	K562	HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP3-449O17.1

General Information

Functions

Localization

Domains (AlphaFold: RP3-449O17.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP3-449O17.1 is not avaliable on ENCORE database.

10 proteins are bound to RP3-449O17.1 RNA:

eCLIP assay for RP3-449O17.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP3-449O17.1 is not available on ENCORE database.

32 RBPs can affect the gene expression of RP3-449O17.1 :

The Knockdown/knockout RNA-Seq assay for RP3-449O17.1 is not available on ENCORE database.

3 RBPs can affect the splicing of RP3-449O17.1 :

The Knockdown/knockout RNA-Seq assay for RP3-449O17.1 is not avaliable on ENCORE database.