RP11-282O18.3

General Information

Gene Name       : RP11-282O18.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-282O18.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-282O18.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-282O18.3 RNA is bound by 10 proteins.  







eCLIP assay for RP11-282O18.3 is not avaliable on ENCORE database.





10 proteins are bound to RP11-282O18.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12123745623123745675-3'-UTR,intron-Distal3.740315.45588K562PUM2
chr12123745761123745806-3'-UTR,intron-Distal,intron-Proximal3.479485.00851HepG2LARP4
chr12123745449123745510-intron-Distal,intron-Proximal3.983055.67291HepG2U2AF2
chr12123745679123745796-3'-UTR,intron-Distal,intron-Proximal3.998836.78743K562TIA1
chr12123745676123745758-3'-UTR,intron-Distal,intron-Proximal3.582738.34503K562PABPC4
chr12123745622123745804-3'-UTR,intron-Distal,intron-Proximal3.004876.24461K562IGF2BP1
chr12123742017123742076-intron-Distal3.870993.24242HepG2HNRNPC
chr12123746121123746198-3'-UTR,intron-Distal,intron-Proximal3.370865.72056K562IGF2BP1
chr12123745679123745774-3'-UTR,intron-Distal,intron-Proximal4.932637.12859K562APOBEC3C
chr12123746126123746177-3'-UTR,intron-Distal,intron-Proximal4.716793.83024HepG2IGF2BP1
chr12123745685123745821-3'-UTR,intron-Distal,intron-Proximal3.332296.45501HepG2DDX55
chr12123745796123745896-3'-UTR,intron-Distal,intron-Proximal4.238309.85374K562TIA1
chr12123745810123745952-3'-UTR,intron-Distal,intron-Proximal4.984944.43128HepG2TIA1
chr12123745646123745780-3'-UTR,intron-Distal,intron-Proximal3.703249.68238K562DDX6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-282O18.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-282O18.3 is not available on ENCORE database.

  • 26 RBPs can affect the levels of RP11-282O18.3.  








The Knockdown/knockout RNA-Seq assay for RP11-282O18.3 is not available on ENCORE database.





26 RBPs can affect the gene expression of RP11-282O18.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-282O18.3ENSG00000235423.4118.1888066.177500.836603.178402.36270HepG2AKAP8L
RP11-282O18.3ENSG00000235423.483.64630143.81230-0.781802.510701.58790HepG2CCAR1
RP11-282O18.3ENSG00000235423.418.7244065.85210-1.814306.024305.11220HepG2CKAP4
RP11-282O18.3ENSG00000235423.4119.6755057.199401.065004.043503.23780HepG2DDX21
RP11-282O18.3ENSG00000235423.489.65760153.05250-0.771502.167301.30570HepG2DDX59
RP11-282O18.3ENSG00000235423.428.3212072.23440-1.350804.136003.29070HepG2DNAJC21
RP11-282O18.3ENSG00000235423.435.9368071.61430-0.994802.893302.22920HepG2DNAJC2
RP11-282O18.3ENSG00000235423.4165.3971048.398601.772808.742007.55680HepG2EIF4B
RP11-282O18.3ENSG00000235423.427.2554069.84320-1.357603.454102.55200HepG2EIF4G2
RP11-282O18.3ENSG00000235423.426.8487064.36410-1.261403.278402.36930HepG2EWSR1
RP11-282O18.3ENSG00000235423.447.76010152.78660-1.677606.892605.91090HepG2GPKOW
RP11-282O18.3ENSG00000235423.439.0580080.58650-1.044903.401102.73550HepG2HNRNPU
RP11-282O18.3ENSG00000235423.412.5277043.24430-1.787403.259702.39000HepG2PRPF8
RP11-282O18.3ENSG00000235423.429.9645069.94460-1.223002.113601.58300HepG2PUF60
RP11-282O18.3ENSG00000235423.4112.2970074.258600.596602.124401.59110HepG2PUM1
RP11-282O18.3ENSG00000235423.481.7132042.925100.928602.279201.71350HepG2RECQL
RP11-282O18.3ENSG00000235423.440.5613071.76240-0.823102.034401.46890HepG2SAFB2
RP11-282O18.3ENSG00000235423.434.95600109.07410-1.641707.118906.00100HepG2SF3A3
RP11-282O18.3ENSG00000235423.474.08160160.58240-1.116104.179803.21160HepG2SNRNP70
RP11-282O18.3ENSG00000235423.426.8925084.90400-1.658606.041005.37980HepG2SRFBP1
RP11-282O18.3ENSG00000235423.461.24230155.28600-1.342303.986502.76140HepG2SRSF3
RP11-282O18.3ENSG00000235423.458.84680142.10940-1.272005.634004.65480HepG2TARDBP
RP11-282O18.3ENSG00000235423.441.7169078.28280-0.908102.414001.94140HepG2TIAL1
RP11-282O18.3ENSG00000235423.449.93280106.38690-1.091304.522003.86680HepG2ZNF622
RP11-282O18.3ENSG00000235423.422.491204.110702.451803.251802.24300K562MATR3
RP11-282O18.3ENSG00000235423.435.631209.659601.883003.100702.10600K562TIAL1
RP11-282O18.3ENSG00000235423.468.6329026.990401.346403.911903.06950K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-282O18.3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-282O18.3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-282O18.3 is not avaliable on ENCORE database.