PRR16

General Information

Gene Name       : PRR16
Gene ID             : ENSG00000184838.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRR16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRR16ENSG00000184838.140.000.000.00ENCSR000AEF
HepG2PRR16ENSG00000184838.140.000.000.00ENCSR985KAT
K562PRR16ENSG00000184838.147.516.797.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRR16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRR16 RNA is bound by 5 proteins.  







eCLIP assay for PRR16 is not avaliable on ENCORE database.





5 proteins are bound to PRR16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5119849249119849320+intron-Distal4.343323.42734K562PTBP1
chr5119964348119964504+intron-Distal4.983375.81225K562PTBP1
chr5119895844119895905+intron-Distal4.064763.30687K562EXOSC5
chr5119939633119939685+intron-Distal4.167983.89080K562EXOSC5
chr5119941704119941853+intron-Distal4.882356.14384K562RBFOX2
chr5119893139119893240+intron-Distal5.102045.61339K562QKI
chr5119811095119811161+intron-Distal5.540706.57566K562PTBP1
chr5119827967119828041+intron-Distal4.070894.13641K562TARDBP
chr5119830015119830042+intron-Distal4.111313.30687K562EXOSC5
chr5119827176119827298+intron-Distal4.7898611.20756K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRR16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRR16 is not available on ENCORE database.

  • 27 RBPs can affect the levels of PRR16.  








The Knockdown/knockout RNA-Seq assay for PRR16 is not available on ENCORE database.





27 RBPs can affect the gene expression of PRR16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRR16ENSG00000184838.10131.53160203.13690-0.627002.964602.37990K562AGGF1
PRR16ENSG00000184838.1098.94360211.36730-1.095106.790005.73040K562AKAP8L
PRR16ENSG00000184838.1017.73570123.72360-2.8024012.8017011.67240K562AQR
PRR16ENSG00000184838.10157.20640221.76410-0.496402.371301.53090K562ATP5C1
PRR16ENSG00000184838.1069.89710176.36290-1.335206.043004.41390K562CNOT7
PRR16ENSG00000184838.10109.51970169.73470-0.632102.483501.73810K562CPSF6
PRR16ENSG00000184838.10115.92330194.55630-0.747003.480202.38420K562CELF1
PRR16ENSG00000184838.1031.1638066.76430-1.099202.892402.05350K562EIF4A3
PRR16ENSG00000184838.1081.18350146.36170-0.850303.341502.32980K562FTO
PRR16ENSG00000184838.1087.76970162.06070-0.884703.780402.85780K562GPKOW
PRR16ENSG00000184838.1040.6709084.74680-1.059202.883102.27620K562HNRNPC
PRR16ENSG00000184838.10273.93280165.958100.722903.870202.93200K562HSPD1
PRR16ENSG00000184838.1035.1213086.81200-1.305504.283602.42110K562ILF3
PRR16ENSG00000184838.10137.04570224.33400-0.711003.251502.35040K562KIF1C
PRR16ENSG00000184838.1059.83870158.18690-1.402507.645706.15430K562METAP2
PRR16ENSG00000184838.1070.85890119.41660-0.753002.638401.84790K562MTPAP
PRR16ENSG00000184838.1054.78500132.67540-1.276006.331905.26490K562NSUN2
PRR16ENSG00000184838.1060.59040169.43350-1.483606.575204.67950K562PABPC1
PRR16ENSG00000184838.1089.10960163.01090-0.871302.368801.46730K562PABPN1
PRR16ENSG00000184838.1056.26920113.31130-1.009902.100901.37560K562PCBP3
PRR16ENSG00000184838.1032.1018086.90130-1.436703.360202.47060K562POLR2G
PRR16ENSG00000184838.1093.60060209.66020-1.163506.634805.83580K562PUS1
PRR16ENSG00000184838.10105.35580204.24760-0.955005.561204.74600K562RBM15
PRR16ENSG00000184838.1085.84040160.65560-0.904203.062501.45290K562SBDS
PRR16ENSG00000184838.1075.48240140.67910-0.898203.910003.06800K562UPF1
PRR16ENSG00000184838.1076.69060120.37370-0.650402.097901.33730K562WDR3
PRR16ENSG00000184838.1078.58980125.18110-0.671602.452101.65320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRR16 is not available on ENCORE database.





1 RBPs can affect the splicing of PRR16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRR16ENSG00000184838.10chr5+1198168631198169881198000181198003401200216481200230270.750000.006260.05597includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRR16 is not avaliable on ENCORE database.